Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

error running ss3t_csd_beta1 #34

Open
alfarmer8 opened this issue Jan 30, 2023 · 0 comments
Open

error running ss3t_csd_beta1 #34

alfarmer8 opened this issue Jan 30, 2023 · 0 comments
Labels
bug Bug

Comments

@alfarmer8
Copy link

Dear experts,

I have single shell dti data B0, B1000, 20 directions with four B0 on mouse data. I ran preprocessing in mrtrix and was following the instructions here for 3 tissue estimation https://3tissue.github.io/doc/ss3t-csd.html . I also averaged the response functions for each tissue across all subjects using response mean. After running SS3T-CSD method I received the following error and no fods were created "ERROR] Signal decay metric (SDM) ordering should be: SDM(SF WM) < SDM(GM) < SDM(CSF)." A screenshot of the output is below. Any help would be appreciated!
-Anna
image
#!/bin/bash

@alfarmer8 alfarmer8 added the bug Bug label Jan 30, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Bug
Development

No branches or pull requests

1 participant