Add "Notebook" as tool type

[Kigaard]

Some tools are "scripts" in the form of Juypyter Notebooks. Therefore, it could be an idea to add "Notebook", or its synonyms "Notebook Interface" or "Computational Notebook". See https://en.wikipedia.org/wiki/Notebook_interface.

Example notebook: https://github.com/fhrzic/XAOM/blob/main/Notebooks/XAOM.ipynb

[Kigaard]

@hansioan @veitveit @matuskalas
Do you have an opinion in the matter?

(Please feel free to tag others)

[veitveit]

Tricky one. Do we have many Jupyter notebooks on bio.tools?

Usually they are used to show examples for running python scripts, and thus more an addition than a tool category.
On the other hand, workflows can also be written as notebooks.

[Kigaard]

@veitveit When going through the tools in the curation work, they certainly exists.

Of course, I forgot to mark the tools, when going through them 😅 In biotools, I have marked the notebooks with Tool type: ' Script' and Language: 'Python'. When I think back, it was quite rare to see Python scripts, so the previous definition should mostly be notebooks.
@hansioan, do you have some easy way of extracting the tools that I added with said definition on your end, when I kind of screw it up...?