init

Author: wxy-nlp

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+### VisualStudioCode
+.vscode/*
+!.vscode/settings.json
+!.vscode/tasks.json
+!.vscode/launch.json
+!.vscode/extensions.json
+*.code-workspace
+**/.vscode
+
+# JetBrains
+.idea/
+
+# Lightning-Hydra-Template
+configs/local/default.yaml
+configs/local/*
+!*/data
+/data/
+logs/
+wandb/
+.env
+.autoenv
+workspace.ipynb
+run/logs
+
+# model weight
+*.ckpt
+
+# pdb
+*.pdb

.gitmodules

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+[submodule "vendor/esm"]
+	path = vendor/esm
+	url = https://github.com/facebookresearch/esm.git

.pre-commit-config.yaml

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+default_language_version:
+  python: python3.7
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.3.0
+    hooks:
+      # list of supported hooks: https://pre-commit.com/hooks.html
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-docstring-first
+      - id: check-yaml
+      - id: debug-statements
+      - id: detect-private-key
+      - id: check-toml
+      - id: check-case-conflict
+      - id: check-added-large-files
+        args: [--maxkb=1000]
+      - id: check-json
+      - id: check-merge-conflict
+      - id: check-shebang-scripts-are-executable
+      - id: fix-byte-order-marker
+      - id: fix-encoding-pragma
+        args: [--remove]
+      - id: mixed-line-ending
+        args: [--fix=lf]
+
+  # python code formatting
+  - repo: https://github.com/psf/black
+    rev: 22.6.0
+    hooks:
+      - id: black
+        args: [--line-length, "79"]
+        language_version: python3.7
+
+  # python import sorting
+  # - repo: https://github.com/PyCQA/isort
+  #   rev: 5.12.0
+  #   hooks:
+  #     - id: isort
+  #       args:
+  #         [
+  #           "--line-length=79",
+  #           "--multi-line=3",
+  #           "--profile=black",
+  #           "--filter-files",
+  #         ]
+  #       language_version: python3.7
+
+  # python upgrading syntax to newer version
+  # - repo: https://github.com/asottile/pyupgrade
+  #   rev: v2.32.1
+  #   hooks:
+  #     - id: pyupgrade
+  #       args: [--py38-plus]
+
+  # python docstring formatting
+  - repo: https://github.com/myint/docformatter
+    rev: v1.4
+    hooks:
+      - id: docformatter
+        args: [--in-place, --wrap-summaries=79, --wrap-descriptions=79]
+
+  # python check (PEP8), programming errors and code complexity
+  - repo: https://github.com/PyCQA/flake8
+    rev: 4.0.1
+    hooks:
+      - id: flake8
+        args:
+          [
+            "--extend-ignore",
+            "E203,E402,E501,F401,F841",
+            "--exclude",
+            "logs/*,data/*",
+          ]
+
+  # python security linter
+  - repo: https://github.com/PyCQA/bandit
+    rev: "1.7.1"
+    hooks:
+      - id: bandit
+        args: ["-s", "B101"]
+
+  # yaml formatting
+  - repo: https://github.com/pre-commit/mirrors-prettier
+    rev: v2.7.1
+    hooks:
+      - id: prettier
+        types: [yaml]
+
+  # shell scripts linter
+  - repo: https://github.com/shellcheck-py/shellcheck-py
+    rev: v0.8.0.4
+    hooks:
+      - id: shellcheck
+
+  # md formatting
+  - repo: https://github.com/executablebooks/mdformat
+    rev: 0.7.14
+    hooks:
+      - id: mdformat
+        args: ["--number"]
+        additional_dependencies:
+          - mdformat-gfm
+          - mdformat-tables
+          - mdformat_frontmatter
+          # - mdformat-toc
+          # - mdformat-black
+
+  # jupyter notebook cell output clearing
+  # - repo: https://github.com/kynan/nbstripout
+  #   rev: 0.5.0
+  #   hooks:
+  #     - id: nbstripout
+
+  # jupyter notebook linting
+  - repo: https://github.com/nbQA-dev/nbQA
+    rev: 1.4.0
+    hooks:
+      - id: nbqa-black
+        args: ["--line-length=79"]
+      - id: nbqa-isort
+        args: ["--profile=black"]
+      - id: nbqa-flake8
+        args:
+          [
+            "--extend-ignore=E203,E402,E501,F401,F841",
+            "--exclude=logs/*,data/*",
+          ]