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Question: How to generate .faa with Eggnog? #508

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cmkobel opened this issue May 6, 2024 · 1 comment
Open

Question: How to generate .faa with Eggnog? #508

cmkobel opened this issue May 6, 2024 · 1 comment

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@cmkobel
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cmkobel commented May 6, 2024

Hello.
I'm using Eggnog to annotate MAGs (metagenome assembled genomes). I'm very excited about the output annotations, but I need the .faa (fasta amino acid) output. Is there a straight forward way of generating this? How do you recommend that I translate my eggnog-called genes to .faa?
@Cantalapiedra
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Dear @cmkobel ,

How are you running eggnog-mapper?
Can you provide a list of the output files you get?

Best,
Carlos

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@cmkobel @Cantalapiedra