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H3ABioNet, SOPs, NATF
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August 15, 2018
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index.html

H3ABioNet logo

This website hosts the Standard Operating Procedures (SOPs) for common data analysis tasks within the H3ABioNet consortium.

The following have associated node accreditation exercises:

  • [Human Variant calling]({{ site.baseurl}}{% link pages/genomics_analysis/Variant-Calling/Variant-Calling-1-0.md %})
  • [Genome Wide Association Studies]({{ site.baseurl}}{% link pages/genomics_analysis/GWAS/GWAS.md %})
  • [Gene expression analysis using RNA-Seq]({{ site.baseurl}}{% link pages/genomics_analysis/RNA-Seq/RNA-Seq-1-0.md %})
  • [16S microbiome analysis]({{ site.baseurl}}{% link pages/genomics_analysis/16s-rRNA/16s-rRNA-1-0.md %})

In addition, we have additional SOPs that cover some of the reporting and review process:

  • [Reviewers of node accreditation reports]({{ site.baseurl}}{% link pages/misc/reviewers.md %})

These SOPs are meant to help various H3ABioNet nodes in their accreditation exercises 1, as per [this protocol]({{ site.baseurl }}/assets/Assessment_protocol.pdf ).

You can use the buttons at the top of the page to navigate those various SOPs, or the side panel to access the subsections within each.

Feedback is also welcome! Please feel free to fork this repo, open an issue or a pull request. Additionally, check out our [contribution guide]({{ site.baseurl}}{% link pages/contributing/cont_tech-guide-1.md %}).

Funding

The development of the H3ABioNet SOPs is supported by the H3Africa program grant U24HG006941 from the National Human Genome Research Institute (NHGRI) of the National Institutes of Health (NIH) entitled “H3ABioNet: Informatics Solutions for H3Africa”. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

References

*[SOPs]: Standard Operating Procedures *[H3Africa]: Human Heredity and Health in Afrcia Consortium *[H3ABioNet]: The Bioinformatics Network within the H3Africa Consortium

Footnotes

  1. Jongeneel, C. Victor, et al. "Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network." PLoS computational biology 13.6 (2017): e1005419 ↩