Isolate unit and int tests

Add GitHub Actions for tests and style

- comment out flake8... until style issues initially resolved
- comment out coverage comparison... until tests merged to `main

Author: awoods

.dockerignore

@@ -0,0 +1,2 @@
+input/*
+output/*

.github/workflows/test.yml

@@ -0,0 +1,67 @@
+name: Tests and Style
+
+on: [push, pull_request]
+
+jobs:
+  build:
+    strategy:
+      matrix:
+        python-version: [3.11.4]
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+          
+      - name: Switch to Current Branch
+        run: git checkout ${{ env.BRANCH }}
+              
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+          pip install -e .
+
+#      - name: Run flake8
+#        run: | 
+#          pip install flake8
+#          # stop the build if there are flake8 errors
+#          flake8 . --count --show-source --statistics
+
+      - name: Run unit tests
+        run: |
+          pip install pytest
+          python -m pytest src/jp2_remediator/tests/unit
+
+      - name: Run coverage
+        run: |
+          pip install coverage
+          python -m coverage run -p -m pytest src/jp2_remediator/tests/unit
+          python -m coverage combine
+          python -m coverage report -m --skip-covered
+          python -m coverage xml
+
+#      # Fetch base branch for comparison (e.g., main)
+#      - name: Fetch base branch
+#        run: git fetch origin main
+
+#      # Compare coverage with the base branch
+#      - name: Compare coverage
+#        run: |
+#          git checkout main
+#          python -m coverage run -p -m pytest src/jp2_remediator/tests/unit
+#          python -m coverage xml -o coverage-base.xml
+#          git checkout -
+#          python -m diff-cover --compare-branch=main coverage.xml
+
+#      # Fail if coverage decreases
+#      - name: Fail if coverage decreases
+#        run: python -m diff-cover --compare-branch=main coverage.xml --fail-under=100
+

.gitignore

@@ -1,7 +1,11 @@
 *~
 *.swp
+input/*
+output/*
+.coverage
+coverage.*
 
 dist/*
 */*.egg-info/*
 __pycache__
-.DS_Store
+.DS_Store

pyproject.toml

@@ -21,3 +21,17 @@ dependencies = []
 [project.urls]
 Homepage = "https://github.com/kimpham54/jp2_remediator"
 Issues = "https://github.com/kimpham54/jp2_remediator/issues"
+
+[tool.pytest.ini_options]
+pythonpath = [
+  ".", "src"
+]
+
+[tool.coverage.run]
+omit = [
+  "**/tests/*"
+]
+
+[tool.project-paths]
+dir_unit_out = "src/jp2_remediator/tests/out/"
+dir_unit_resources = "src/jp2_remediator/tests/resources/"

requirements.txt

@@ -0,0 +1,10 @@
+boto3==1.35.39
+botocore==1.35.39
+jmespath==1.0.1
+jpylyzer==2.2.1
+project-paths==1.1.1
+python-dateutil==2.9.0.post0
+s3transfer==0.10.3
+six==1.16.0
+toml==0.10.2
+urllib3==2.2.3

src/jp2_remediator/tests/test_aws_connection.py src/jp2_remediator/tests/integration/test_aws_connection.py

@@ -3,10 +3,11 @@
 from unittest.mock import patch, mock_open
 from jp2_remediator.box_reader import BoxReader
 from jpylyzer import boxvalidator
+from project_paths import paths
 import datetime
 
 # Define the path to the test data file
-TEST_DATA_PATH = os.path.join(os.path.dirname(__file__), 'sample.jp2')
+TEST_DATA_PATH = os.path.join(paths.dir_unit_resources, 'sample.jp2')
 
 class TestJP2ProcessingWithFile(unittest.TestCase):