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I am getting a 502 Bad Gateway error every time I try to run sierrapy fasta, this is including on files that previously worked fine. Would you be able to provide any insight as to what is happening? Is there a connectivity issue? Here is the full error message:
(rtp-data) [aguang@login008 D51_20230512]$ sierrapy fasta output/sequences.fa -o ../august-tmp/sierra.json
3%|█▊ | 200/7797 [00:31<19:52, 6.37it/s]<html>
<head><title>502 Bad Gateway</title></head>
<body bgcolor="white">
<center><h1>502 Bad Gateway</h1></center>
<hr><center>nginx/1.10.1</center>
</body>
</html>
Traceback (most recent call last):
File "/gpfs/data/rkantor/conda/envs/rtp-data/bin/sierrapy", line 8, in <module>
sys.exit(main())
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/sierrapy/cmds.py", line 9, in main
cli(obj={})
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/click/core.py", line 829, in __call__
return self.main(*args, **kwargs)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/click/core.py", line 782, in main
rv = self.invoke(ctx)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/click/core.py", line 1259, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/click/core.py", line 1066, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/click/core.py", line 610, in invoke
return callback(*args, **kwargs)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/click/decorators.py", line 21, in new_func
return f(get_current_context(), *args, **kwargs)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/sierrapy/commands/fasta.py", line 35, in fasta
result = client.sequence_analysis(sequences, query, 100)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/sierrapy/sierraclient.py", line 161, in sequence_analysis
return list(self.iter_sequence_analysis(sequences, query, step))
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/sierrapy/sierraclient.py", line 131, in iter_sequence_analysis
for result in self._sequence_analysis(sequences[:step], query):
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/sierrapy/sierraclient.py", line 64, in _sequence_analysis
result = self.execute(
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/sierrapy/sierraclient.py", line 54, in execute
for e in e.response.json()['errors']
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/site-packages/requests/models.py", line 898, in json
return complexjson.loads(self.text, **kwargs)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/json/__init__.py", line 357, in loads
return _default_decoder.decode(s)
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/gpfs/data/rkantor/conda/envs/rtp-data/lib/python3.8/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
3%|█▊ | 200/7797 [00:43<27:19, 4.63it/s]
The text was updated successfully, but these errors were encountered:
I am getting a 502 Bad Gateway error every time I try to run
sierrapy fasta, this is including on files that previously worked fine. Would you be able to provide any insight as to what is happening? Is there a connectivity issue? Here is the full error message:The text was updated successfully, but these errors were encountered: