Create README.md

Author: jingraham

README.md

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+# Graph-Based Protein Design
+
+This repo contains code for [Generative Models for Graph-Based Protein Design](https://papers.nips.cc/paper/9711-generative-models-for-graph-based-protein-design) by John Ingraham, Vikas Garg, Regina Barzilay and Tommi Jaakkola, NeurIPS 2019.
+
+Our approach 'designs' protein sequences for target 3D structures via a graph-conditioned, autoregressive language model:
+<p align="center"><img src="data/scheme.png" width="500"></p>
+
+
+## Overview
+* `struct2seq/` contains model code
+* `experiments/` contains scripts for training and evaluating the model
+* `data/` contains scripts for building and processing datasets in the paper
+
+## Requirements
+* Python >= 3.0
+* PyTorch >= 1.0
+* Numpy
+
+## Citation
+```
+@inproceedings{ingraham2019generative,
+author = {Ingraham, John and Garg, Vikas K and Barzilay, Regina and Jaakkola, Tommi},
+title = {Generative Models for Graph-Based Protein Design},
+booktitle = {Advances in Neural Information Processing Systems}
+year = {2019}
+}
+```