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Use the most recent Zika tutorial link instead of one that will soon be deprecated (and redirect to this link anyway).
Co-authored-by: Elias Harkins <[email protected]>
Copy file name to clipboardexpand all lines: docs/usage/cli/index.rst
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Speed up filtering with a sequence index
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As we describe in :doc:`the zika tutorial <docs.nextstrain.org:tutorials/zika_tutorial>`, augur index precalculates the composition of the sequences (e.g., numbers of nucleotides, gaps, invalid characters, and total sequence length) prior to filtering.
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As we describe in :doc:`the zika tutorial <docs.nextstrain.org:tutorials/zika>`, augur index precalculates the composition of the sequences (e.g., numbers of nucleotides, gaps, invalid characters, and total sequence length) prior to filtering.
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The resulting sequence index speeds up subsequent filter steps especially in more complex workflows.
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