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Merge pull request #295 from nextstrain/shorten-authors
Shorten authors
2 parents af33cf2 + b808841 commit 36b3e82

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-42
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3 files changed

+42
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ingest/defaults/config.yaml

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@@ -40,11 +40,11 @@ curate:
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# List of string fields to titlecase
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fields: ['region', 'country', 'division', 'location']
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# Authors field name
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authors_field: 'authors'
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authors_field: 'full_authors'
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# Authors default value if authors value is empty
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authors_default_value: '?'
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# Field name for the generated abbreviated authors
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abbr_authors_field: 'abbr_authors'
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abbr_authors_field: 'authors'
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# General geolocation rules to apply to geolocation fields
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geolocation_rules_url: 'https://raw.githubusercontent.com/nextstrain/ncov-ingest/master/source-data/gisaid_geoLocationRules.tsv'
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# Local geolocation rules that are only applicable to mpox data
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'host',
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'date_submitted',
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'sra_accession',
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'abbr_authors',
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'authors',
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'full_authors',
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'institution'
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]
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ingest/defaults/ncbi-dataset-field-map.tsv

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@@ -13,5 +13,5 @@ Isolate Lineage source isolation_source
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BioProjects bioproject_accession
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BioSample accession biosample_accession
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SRA Accessions sra_accession
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Submitter Names authors
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Submitter Names full_authors
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Submitter Affiliation submitting_organization

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