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ingest/nextclade: Use all available workflow cores
Chatter on Slack regarding workflow runtimes made me realize that since we only run a single Nextclade job now, we no longer need to put a hard limit on the threads. <https://bedfordlab.slack.com/archives/C01LCTT7JNN/p1729629899871479?thread_ts=1729629155.721859&cid=C01LCTT7JNN>
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ingest/rules/nextclade.smk

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@@ -30,7 +30,7 @@ rule run_nextclade:
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# The lambda is used to deactivate automatic wildcard expansion.
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# https://github.com/snakemake/snakemake/blob/384d0066c512b0429719085f2cf886fdb97fd80a/snakemake/rules.py#L997-L1000
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translations=lambda w: "results/translations/{cds}.fasta",
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threads: 4
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threads: workflow.cores
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log:
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"logs/run_nextclade.txt",
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benchmark:

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