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Lint modules and sbwf with nf-core pipelines lint by default #3478

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LouisLeNezet opened this issue Mar 5, 2025 · 0 comments · Fixed by #3480
Closed

Lint modules and sbwf with nf-core pipelines lint by default #3478

LouisLeNezet opened this issue Mar 5, 2025 · 0 comments · Fixed by #3480
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@LouisLeNezet
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LouisLeNezet commented Mar 5, 2025

Description of the bug

When linting modification are made to the .nf-core.yml the command nf-core pipelines lint does not check the subworkflows and modules.
This line should be
if lint_obj.lint_config and lint_obj.lint_config["nfcore_components"] is not None:, because we set all lint_config fields to None by default.

Command used and terminal output

nf-core pipelines lint

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@LouisLeNezet LouisLeNezet added the bug Something isn't working label Mar 5, 2025
@LouisLeNezet LouisLeNezet linked a pull request Mar 5, 2025 that will close this issue
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@mirpedrol mirpedrol added this to the 3.3.0 milestone Mar 6, 2025
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