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mainunit.pas
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unit mainunit;
//{$mode delphi}
{$mode delphi}{$H+}
{$IFDEF LCLCocoa}
//MetalAPI supported on modern MacOS: disable for Linux, Windows and old MacOS
//{$DEFINE METALAPI} //set in ProjectOptions/CompilerOptions/CustomOptions: -dMETALAPI
//{$modeswitch objectivec1}
{$modeswitch objectivec1}
{$DEFINE NewCocoa}
//{$DEFINE DARKMODE}
{$ENDIF}
{$IFNDEF METALAPI}
{$WARN 5023 off : Unit "$1" not used in $2}
{$include ./Metal-Demos/common/glopts.inc}
{$DEFINE MATCAP}
{$ENDIF}
{$IFDEF LCLCarbon}
error: you must compile for the Cocoa widgetset (ProjectOptions/Additions&Overrides)
{$ENDIF}
{$DEFINE COMPILEYOKE} //use yoking
{$DEFINE CLRBAR} //provide color bar
{$DEFINE GRAPH} //timeseries viewer
{$DEFINE AFNI} //afni statistical maps \
{$WARN 5024 OFF} //disable warnings about unused parameters
{$WARN 5043 off : Symbol "$1" is deprecated}
{$DEFINE MATT1}
{$IFDEF MYPY}{$IFNDEF PY4LAZ}
{$include ./PythonBridge/pyopts.inc} //for PYTHON_DYNAMIC
{$ifdef darwin}
{$ifdef CPUAARCH64}
{$linklib ./PythonBridge/aarch64-darwin/libpython3.7m.a}
{$else}
{$linklib ./PythonBridge/x86_64-darwin/libpython3.7m.a}
{$endif}
{$endif}
{$ifdef linux}
{$ifndef PYTHON_DYNAMIC}
{$linklib c}
{$linklib m}
{$linklib pthread}
{$linklib util}
{$linklib dl}
{$linklib ./PythonBridge/x86_64-linux/libpython3.7m.a}
{$ENDIF}
{$endif}
{$ENDIF}{$ENDIF}
interface
{$include opts.inc} //for DEFINE MOSAICS
uses
{$IFDEF MATT1}umat, {$ENDIF}
{$IFDEF METALAPI}
MetalPipeline, Metal,MetalControl, mtlvolume2,
{$IFDEF GRAPH}mtlgraph,{$ENDIF}
{$IFDEF CLRBAR}mtlclrbar, {$ENDIF}
{$ENDIF}
{$IFDEF COMPILEYOKE} yokesharemem, {$ENDIF}
{$IFDEF Linux} LazFileUtils, {$ENDIF}
{$IFDEF AFNI} nifti_foreign, afni_fdr, {$ENDIF}
{$IFDEF MYPY}
{$IFDEF PY4LAZ}
PythonEngine, //use PythonForLazarus
{$ELSE}
Python3Core, PythonBridge, //use PythonPascalBridge
{$ENDIF}
{$ENDIF} //if MYPY
{$IFDEF Darwin} MacOSAll, CocoaAll,{$ENDIF}
{$IFDEF LCLCocoa}SysCtl, {$IFDEF DARKMODE}nsappkitext, {$ENDIF}{$IFDEF NewCocoa} UserNotification,{$ENDIF} {$ENDIF}
{$IFDEF UNIX}Process,{$ELSE} Windows,{$ENDIF}
{$WARN 5024 OFF}LazVersion,{$WARN 5024 ON}
ctypes, resize, ustat, tiff2nifti, //LCLMessageGlue,
lcltype, GraphType, Graphics, dcm_load, crop, intensityfilter,
LCLIntf, slices2D, StdCtrls, SimdUtils, Classes, SysUtils, Forms, Controls,clipbrd,
Dialogs, Menus, ExtCtrls, CheckLst, ComCtrls, Spin, Types, fileutil, ulandmarks, nifti_types,
nifti_hdr_view, fsl_calls, math, nifti, niftis, prefs, dcm2nii, strutils, drawVolume, autoroi, VectorMath, LMessages;
const
{$include vers.inc}
//{$IFDEF FASTGZ}
//kVers = '1.2.20210831';
//{$ELSE}
//kVers = '1.2.20210831-';
//{$ENDIF}
type
{ TGLForm1 }
TGLForm1 = class(TForm)
CenterPanel: TPanel;
ClipThickLabel: TLabel;
ClipThickTrack: TTrackBar;
ClusterView: TListView;
GraphMenu: TMenuItem;
GraphScalingMenu: TMenuItem;
GraphSaveMenu: TMenuItem;
GraphOpenMenu: TMenuItem;
GraphMarkerMenu: TMenuItem;
GraphRawMenu: TMenuItem;
GraphDemeanMenu: TMenuItem;
GraphNormalizeMenu: TMenuItem;
GraphNormalize01Menu: TMenuItem;
GraphPercentMenu: TMenuItem;
GraphAddMenu: TMenuItem;
GraphShowHideMenu: TMenuItem;
GraphClearMenu: TMenuItem;
GraphSaveBitmapMenu: TMenuItem;
DisplayCorrelationR: TMenuItem;
DisplayCorrelationZ: TMenuItem;
AfniPrevMenu: TMenuItem;
AfniPopup: TPopupMenu;
LayerAfniBtn: TButton;
AfniNextMenu: TMenuItem;
LayerAfniDrop: TComboBox;
MatCapDrop: TComboBox;
CropMenu1: TMenuItem;
EditPasteMenu: TMenuItem;
AddOverlayClusterMenu: TMenuItem;
GraphDrawingMenu: TMenuItem;
DrawFilledMenu: TMenuItem;
LayerIsLabelMenu: TMenuItem;
AfniDetailsMenu: TMenuItem;
AfniDirMenu: TMenuItem;
LayerClusterMenu: TMenuItem;
ClusterCopyMenu: TMenuItem;
ClusterSaveMenu: TMenuItem;
GraphSaveTxtMenu: TMenuItem;
GraphSaveBmpMenu: TMenuItem;
LayerFindPeakMenu: TMenuItem;
AfniPMenu: TMenuItem;
AfniQMenu: TMenuItem;
GraphOpenAddMenu: TMenuItem;
LayerClusterOptsMenu: TMenuItem;
ImportTIFFFolderMenu: TMenuItem;
LayerClusterMeansMenu: TMenuItem;
DrawIntensityFilterMenu: TMenuItem;
DrawDilateMenu: TMenuItem;
LayerExport8BitMenu: TMenuItem;
DicomDirMenu: TMenuItem;
EdgeMenu2: TMenuItem;
IntensityHistogamMenu: TMenuItem;
GraphSqrtMenu: TMenuItem;
IntensityHistogamOptionsMenu: TMenuItem;
GraphLognMenu: TMenuItem;
GraphLog10Menu: TMenuItem;
MatCapDrop2: TComboBox;
MPR4Menu: TMenuItem;
ScriptHaltMenu: TMenuItem;
NimlMenu: TMenuItem;
OpenAFNIMenu: TMenuItem;
ClusterPopUp: TPopupMenu;
GraphPanel: TPanel;
ClusterPanel: TPanel;
GraphPopUp: TPopupMenu;
RemoveSmallClusterMenu: TMenuItem;
ResizeMenu1: TMenuItem;
ReorientMenu1: TMenuItem;
InvalidateTImer: TTimer;
RulerCheck: TCheckBox;
BetterRenderTimer: TTimer;
ClusterGraphSplitter: TSplitter;
ToolsMenu: TMenuItem;
OpenAltasMenu: TMenuItem;
TBSplitter: TSplitter;
LayerWidgetChangeTimer: TTimer;
TopPanel: TPanel;
BottomPanel: TPanel;
AnatDrop: TComboBox;
CreateOverlapImageMenu: TMenuItem;
CreateSubtractionPlotMenu: TMenuItem;
LayerZeroIntensityInvisibleMenu: TMenuItem;
LayerInvertColorMapMenu: TMenuItem;
Smooth2DCheck: TCheckBox;
ZoomBtn: TButton;
LayerOptionsBtn: TButton;
ImportMenu: TMenuItem;
ImportDicomMenu: TMenuItem;
HelpAboutMenu: TMenuItem;
ClrbarMenu: TMenuItem;
ClrbarSep: TMenuItem;
BlackClrbarMenu: TMenuItem;
ExtractBrainMenu: TMenuItem;
LayerUpMenu: TMenuItem;
LayerDownMenu: TMenuItem;
LayerSmoothMenu: TMenuItem;
LayerAdditiveMenu: TMenuItem;
LayerResetBrightnessMenu: TMenuItem;
DrawMenu: TMenuItem;
DrawOpenMenu: TMenuItem;
DrawSaveMenu: TMenuItem;
DrawTransparencyMenu: TMenuItem;
DrawHideMenu: TMenuItem;
DrawTrans25Menu: TMenuItem;
DrawTrans50Menu: TMenuItem;
DrawTrans90Menu: TMenuItem;
DrawColorMenu: TMenuItem;
DrawNoneMenu: TMenuItem;
DrawEraseMenu: TMenuItem;
DrawRedMenu: TMenuItem;
DrawAdvancedMenu: TMenuItem;
DrawGreenMenu: TMenuItem;
DrawBlueMenu: TMenuItem;
DrawOverwriteMenu: TMenuItem;
DrawUndoMenu: TMenuItem;
DrawCloseMenu: TMenuItem;
DrawBinarizeMenu: TMenuItem;
DrawSmoothMenu: TMenuItem;
DrawCloneMenu: TMenuItem;
DrawAutomaticMenu: TMenuItem;
DrawInterpolateMenu: TMenuItem;
DrawInterpolate2Menu: TMenuItem;
DrawInterpolateAxMenu: TMenuItem;
DrawInterpolateCorMenu: TMenuItem;
DrawInterpolateSagMenu: TMenuItem;
DrawDescriptivesMenu: TMenuItem;
LayerFromZeroMenu: TMenuItem;
ApplePrefMenu: TMenuItem;
EditMenu: TMenuItem;
EditCopyMenu: TMenuItem;
FileSepMenu: TMenuItem;
FileExitMenu: TMenuItem;
HelpPrefMenu: TMenuItem;
LayerCloseMenu: TMenuItem;
DisplaySep3: TMenuItem;
DisplayNextMenu: TMenuItem;
DisplayPrevMenu: TMenuItem;
LayerShowHeaderMenu: TMenuItem;
LandmarkMenu: TMenuItem;
LandmarkOpenMenu: TMenuItem;
LandmarkSaveMenu: TMenuItem;
LandmarkAddMenu: TMenuItem;
LandmarkUpdateMenu: TMenuItem;
LandmarkDeleteMenu: TMenuItem;
LandmarkSelectNext: TMenuItem;
LayerNextVolumeMenu: TMenuItem;
LayerPrevVolumeMenu: TMenuItem;
LayerCutoutMenu: TMenuItem;
MenuItem1: TMenuItem;
DisplayAnimateMenu: TMenuItem;
LayerShowBidsMenu: TMenuItem;
ExitFullScreenMenu: TMenuItem;
LayerMaskWithBackgroundMenu: TMenuItem;
MaskMenu: TMenuItem;
MaskDeleteMenu: TMenuItem;
MaskPreserveMenu: TMenuItem;
DrawHintsMenu: TMenuItem;
ImportTIFFMenu: TMenuItem;
RemoveHazeOptionsMenu: TMenuItem;
SaveNIfTIMenu: TMenuItem;
StoreFMRIMenu: TMenuItem;
SmoothMenu: TMenuItem;
TextAndCubeMenu: TMenuItem;
OpenFSLMenu: TMenuItem;
OpenStandardMenu: TMenuItem;
NewWindowMenu: TMenuItem;
AnimateTimer: TTimer;
YokeTimer: TTimer;
YokeMenu: TMenuItem;
DisplaySep2: TMenuItem;
ScriptingPyVersion: TMenuItem;
TransBlackClrbarMenu: TMenuItem;
TransWhiteClrbarMenu: TMenuItem;
WhiteClrbarMenu: TMenuItem;
VisibleClrbarMenu: TMenuItem;
ScriptingNewMenu: TMenuItem;
RemoveHazeMenu: TMenuItem;
OpenRecentMenu: TMenuItem;
MosLabelCheck: TCheckBox;
MosaicText: TMemo;
MosCrossCheck: TCheckBox;
MosOrientDrop: TComboBox;
CutNearBtn: TButton;
CutNoneBtn: TButton;
CutoutBox: TGroupBox;
MosOrientLabel: TLabel;
MosColLabel: TLabel;
MosRowOverlapTrack: TTrackBar;
MosRowLabel: TLabel;
MosaicBox: TGroupBox;
MosColEdit: TSpinEdit;
MosRowEdit: TSpinEdit;
MosColOverlapTrack: TTrackBar;
Y2TrackBar: TTrackBar;
Z2TrackBar: TTrackBar;
YLabel: TLabel;
SliceZoom: TTrackBar;
ZLabel: TLabel;
XTrackBar: TTrackBar;
XLabel: TLabel;
XCoordEdit: TEdit;
CoordLabel: TLabel;
SliceABtn: TButton;
SliceLBtn: TButton;
SliceRBtn: TButton;
SliceSBtn: TButton;
SlicePBtn: TButton;
SliceBox: TGroupBox;
LineColorBtn: TButton;
ClipAziTrack: TTrackBar;
ClipElevTrack: TTrackBar;
AddOverlayMenu: TMenuItem;
DisplaySep: TMenuItem;
DisplayLeftMenu: TMenuItem;
DisplayRightMenu: TMenuItem;
DisplayPosteriorMenu: TMenuItem;
DisplayAnteriorMenu: TMenuItem;
DisplayInferiorMenu: TMenuItem;
DisplaySuperiorMenu: TMenuItem;
LineWidthLabel: TLabel;
LineBox: TGroupBox;
HelpMenu: TMenuItem;
OnlineHelpMenu: TMenuItem;
ScriptOpenDialog: TOpenDialog;
ScriptingMenu: TMenuItem;
ScriptingSepMenu: TMenuItem;
ScriptingSaveMenu: TMenuItem;
ScriptingRunMenu: TMenuItem;
ScriptingTemplatesMenu: TMenuItem;
ScriptingOpenMenu: TMenuItem;
SharpenMenu: TMenuItem;
S2Label: TLabel;
S3Label: TLabel;
S4Label: TLabel;
S5Label: TLabel;
S1Track: TTrackBar;
LightAziTrack: TTrackBar;
QLabel: TLabel;
LightLabel: TLabel;
LightElevTrack: TTrackBar;
S1Label: TLabel;
S2Track: TTrackBar;
S3Track: TTrackBar;
S4Track: TTrackBar;
S6Label: TLabel;
S7Label: TLabel;
S8Label: TLabel;
S9Label: TLabel;
S10Label: TLabel;
S5Track: TTrackBar;
S6Track: TTrackBar;
S7Track: TTrackBar;
S8Track: TTrackBar;
S9Track: TTrackBar;
S10Track: TTrackBar;
ShaderDrop: TComboBox;
LayerAlphaLabel: TLabel;
ClipDepthLabel: TLabel;
ClipDepthTrack: TTrackBar;
ClipAziLabel: TLabel;
ClipElevLabel: TLabel;
LayerColorDrop: TComboBox;
LayerDarkEdit: TEdit;
LayerBrightEdit: TEdit;
LayerDarkLabel: TLabel;
LayerBrightLabel: TLabel;
LayerList: TCheckListBox;
ColorDialog1: TColorDialog;
ClipBox: TGroupBox;
LayerPopup: TPopupMenu;
ScriptMemo: TMemo;
ScriptOutputMemo: TMemo;
ScriptBox: TGroupBox;
ScriptPanel: TPanel;
ShaderBox: TGroupBox;
LayerBox: TGroupBox;
MainMenu: TMainMenu;
FileMenu: TMenuItem;
ResetDefaultsMenu: TMenuItem;
DisplayMenu: TMenuItem;
CoronalMenu: TMenuItem;
ColorMenu: TMenuItem;
BackColorMenu: TMenuItem;
ColorEditorMenu: TMenuItem;
LineWidthEdit: TSpinEdit;
SliceIBtn: TButton;
YCoordEdit: TEdit;
ZCoordEdit: TEdit;
ScriptSplitter: TSplitter;
ToolPanel: TScrollBox;
SagittalLMenu: TMenuItem;
MosaicMenu: TMenuItem;
SagittalMenu: TMenuItem;
MPRMenu: TMenuItem;
RenderMenu: TMenuItem;
AxialMenu: TMenuItem;
SaveDialog1: TSaveDialog;
SaveMenu: TMenuItem;
AppleMenu: TMenuItem;
AboutMenu: TMenuItem;
OpenDialog1: TOpenDialog;
LeftSplitter: TSplitter;
RightSplitter: TSplitter;
LayerAlphaTrack: TTrackBar;
QualityTrack: TTrackBar;
UpdateTimer: TTimer;
ViewMenu: TMenuItem;
OpenMenu: TMenuItem;
X2TrackBar: TTrackBar;
YTrackBar: TTrackBar;
ZTrackBar: TTrackBar;
procedure AfniPMenuClick(Sender: TObject);
procedure AfniQMenuClick(Sender: TObject);
procedure CenterPanelClick(Sender: TObject);
procedure DicomDirMenuClick(Sender: TObject);
procedure DrawIntensityFilterMenuClick(Sender: TObject);
procedure GetHistogramPrefs(var bins: integer; var mn, mx: single; var isClampExtremeValues, isIgnoreZeros: boolean);
procedure IntensityHistogamMenuClick(Sender: TObject);
function DoG(layer: integer): boolean;
procedure EdgeMenuClick(Sender: TObject);
procedure FormChangeBounds(Sender: TObject);
procedure FormResize(Sender: TObject);
procedure FormShortCut(var Msg: TLMKey; var Handled: Boolean);
function HasLabelLayer: boolean;
procedure ClusterSaveClick(Sender: TObject);
procedure ClusterViewColumnClick(Sender: TObject; Column: TListColumn);
procedure ClusterViewCompare(Sender: TObject; Item1, Item2: TListItem;
Data: Integer; var Compare: Integer);
procedure AddOverlayClusterMenuClick(Sender: TObject);
procedure AfniDetailsMenuClick(Sender: TObject);
procedure AfniDirMenuClick(Sender: TObject);
procedure BetterRenderTimerTimer(Sender: TObject);
procedure ClusterByMenuClick(Sender: TObject);
procedure ClusterViewMouseUp(Sender: TObject; Button: TMouseButton;
Shift: TShiftState; X, Y: Integer);
procedure ClusterViewSelectItem(Sender: TObject; Item: TListItem;
Selected: Boolean);
procedure EditPasteMenuClick(Sender: TObject);
function DefaultImage():string;
procedure FormCreate(Sender: TObject);
procedure GraphPanelResize(Sender: TObject);
procedure GraphPanelShow();
procedure ImportTIFFFolderMenuClick(Sender: TObject);
procedure InvalidateTImerTimer(Sender: TObject);
procedure LayerAfniBtnClick(Sender: TObject);
procedure LayerAfniDropClick(Sender: TObject);
procedure LayerClusterMenuClick(Sender: TObject);
procedure LayerContrastChange(Sender: TObject);
procedure GraphDrawingMenuClick(Sender: TObject);
procedure LayerExport8BitMenuClick(Sender: TObject);
procedure LayerFindPeakMenuClick(Sender: TObject);
procedure LayerIsLabelMenuClick(Sender: TObject);
procedure LayerSmoothMenuClick(Sender: TObject);
procedure DrawDilateMenuClick(Sender: TObject);
procedure MatCapDrop2Change(Sender: TObject);
procedure MenuItem3Click(Sender: TObject);
procedure NimlMenuClick(Sender: TObject);
procedure RemoveSmallClusterMenuClick(Sender: TObject);
procedure RulerVisible();
procedure RulerCheckChange(Sender: TObject);
procedure ScriptHaltMenuClick(Sender: TObject);
procedure ScriptingPyVersionClick(Sender: TObject);
procedure ScriptingSepMenuClick(Sender: TObject);
procedure UpdateCropMask(msk: TVec6);
procedure CreateOverlapImageMenuClick(Sender: TObject);
procedure CreateSubtractionPlotMenuClick(Sender: TObject);
procedure ApplyCrop(crop: TVec6i; cropVols: TPoint);
procedure CropMenuClick(Sender: TObject);
procedure DisplayCorrelationRClick(Sender: TObject);
procedure FormKeyDown(Sender: TObject; var Key: Word; Shift: TShiftState);
procedure FormKeyPress(Sender: TObject; var Key: char);
procedure FormMouseDown(Sender: TObject; Button: TMouseButton;
Shift: TShiftState; X, Y: Integer);
procedure GraphMouseWheel(Sender: TObject; Shift: TShiftState; WheelDelta: Integer; MousePos: TPoint; var Handled: Boolean);
procedure GraphMouseDown(Sender: TObject; Button: TMouseButton;Shift: TShiftState; X, Y: Integer);
procedure GraphAddMenuClick(Sender: TObject);
procedure GraphClearMenuClick(Sender: TObject);
procedure GraphMarkerMenuClick(Sender: TObject);
procedure GraphOpenMenuClick(Sender: TObject);
function GraphOpen(fnm: string; isKeepOldGraph: boolean = false; isShowMessageOnError: boolean = false): boolean;
procedure GraphSaveBitmapMenuClick(Sender: TObject);
procedure GraphSaveMenuClick(Sender: TObject);
procedure GraphScaleClick(Sender: TObject);
procedure GraphShowHideMenuClick(Sender: TObject);
procedure LayerInvertColorMapMenuClick(Sender: TObject);
procedure LayerWidgetChangeTimerTimer(Sender: TObject);
procedure LayerZeroIntensityInvisibleMenuClick(Sender: TObject);
procedure MatCapDropChange(Sender: TObject);
procedure ReorientMenuClick(Sender: TObject);
procedure ReportPositionXYZ(isUpdateYoke: boolean = false);
procedure AnatAddBtnClick(Sender: TObject);
procedure AnatDeleteBtnClick(Sender: TObject);
procedure AnatDropChange(Sender: TObject);
procedure AnatSaveBtnClick(Sender: TObject);
procedure AnatUpdate();
function OpenDialogExecute (lFilter,lCaption: string): TStringList;
function OpenDialogExecute1 (lFilter,lCaption: string): String;
procedure AnatOpenBtnClick(Sender: TObject);
procedure AnatUpdateBtnClick(Sender: TObject);
procedure AnimateTimerTimer(Sender: TObject);
procedure CreateStandardMenus (ParentMenu: TMenuItem);
procedure DisplayAnimateMenuClick(Sender: TObject);
function Active4DLayer: integer;
function DisplayNextMenuClick(Sender: TObject): boolean;
procedure DrawHintsMenuClick(Sender: TObject);
procedure EditCopyMenuClick(Sender: TObject);
procedure UpdateColorBar;
procedure ExitFullScreenMenuClick(Sender: TObject);
procedure FileExitMenuClick(Sender: TObject);
procedure FormCloseQuery(Sender: TObject; var CanClose: boolean);
procedure ImportTIFFMenuClick(Sender: TObject);
procedure LandmarkSelectNextClick(Sender: TObject);
procedure LayerCloseMenuClick(Sender: TObject);
procedure AfniNextClick(Sender: TObject);
procedure LayerListClickCheck(Sender: TObject);
procedure LayerListShowHint(Sender: TObject; HintInfo: PHintInfo);
procedure LayerMaskWithBackgroundMenuClick(Sender: TObject);
procedure LayerOptionsBtnClick(Sender: TObject);
procedure LayerShowBidsMenuClick(Sender: TObject);
procedure LayerShowHeaderMenuClick(Sender: TObject);
procedure LayerVolumeChange(Sender: TObject);
procedure MaskMenuClick(Sender: TObject);
procedure MouseGesturesMenu(Sender: TObject);
procedure OpenFSLMenuClick(Sender: TObject);
procedure Quit2TextEditor;
procedure DrawAutomaticMenuClick(Sender: TObject);
procedure DrawBinarizeMenuClick(Sender: TObject);
procedure DrawCloneMenuClick(Sender: TObject);
procedure DrawCloseMenuClick(Sender: TObject);
procedure DrawDescriptivesMenuClick(Sender: TObject);
procedure DrawSmoothMenuClick(Sender: TObject);
procedure DrawUndoMenuClick(Sender: TObject);
procedure EnsureOpenVoi();
procedure ClrbarClr(i: integer);
procedure InterpolateDrawMenuClick(Sender: TObject);
procedure LayerFromZeroMenuClick(Sender: TObject);
procedure HelpPrefMenuClick(Sender: TObject);
procedure ResizeMenuClick(Sender: TObject);
procedure SaveMosaicBmp(bmpName: string);
procedure DrawSaveMenuClick(Sender: TObject);
function Save2Bmp(fnm: string): boolean;
procedure DrawOpenMenuClick(Sender: TObject);
procedure DrawTool1Click(Sender: TObject);
procedure DrawTransClick(Sender: TObject);
procedure ExtractBrainMenuClick(Sender: TObject);
procedure FormDestroy(Sender: TObject);
procedure FormShow(Sender: TObject);
procedure LayerAdditiveMenuClick(Sender: TObject);
procedure LayerPopupPopup(Sender: TObject);
procedure LayerMoveUpOrDown(layer: integer; isMoveDown:boolean);
procedure LayerResetBrightnessMenuClick(Sender: TObject);
procedure LayerUpDownClick(Sender: TObject);
procedure NewWindowMenuClick(Sender: TObject);
function NiftiSaveDialogFilename(isVOI: boolean = false; initialFilename: string = ''): string;
procedure SaveNIfTIMenuClick(Sender: TObject);
procedure ClipIntensity(Lo, Hi: single);
procedure ScriptMemoKeyUp(Sender: TObject; var Key: Word; Shift: TShiftState);
procedure ScriptPanelDblClick(Sender: TObject);
procedure SetColorBarPosition;
procedure SliceZoomChange(Sender: TObject);
procedure SmoothCheckChange(Sender: TObject);
procedure SmoothMenuClick(Sender: TObject);
procedure StoreFMRIMenuClick(Sender: TObject);
procedure TextAndCubeMenuClick(Sender: TObject);
procedure ViewGPUgPrepare(Sender: TObject);
procedure ToolPanelDblClick(Sender: TObject);
procedure SaveColorTable;
procedure ClrbarVisibleClick(Sender: TObject);
procedure CoordEditChange(Sender: TObject);
procedure CutNearBtnClick(Sender: TObject);
procedure CutNoneBtnClick(Sender: TObject);
{$IFDEF DARKMODE}
procedure SetFormDarkMode(f: TForm);
procedure SetDarkMode();
{$ENDIF}
procedure SetToolPanelMaxWidth();
function ClusterOpen(fnm: string): boolean;
procedure DisplayViewMenu(Sender: TObject);
procedure FormClose(Sender: TObject; var CloseAction: TCloseAction);
procedure ImportDicomMenuClick(Sender: TObject);
procedure LayerAlphaTrackMouseUp(Sender: TObject; Button: TMouseButton;
Shift: TShiftState; X, Y: Integer);
procedure LayerChange(layer, colorTag, opacityPercent: integer; displayMin, displayMax: single);
procedure LayerListSelectionChange(Sender: TObject; User: boolean);
procedure LayerWidgetChange(Sender: TObject);
procedure LineColorBtnClick(Sender: TObject);
//procedure LineColorOpacityTrackChange(Sender: TObject);
procedure LineWidthEditChange(Sender: TObject);
procedure MosaicTextChange(Sender: TObject);
procedure OrientBtnClick(Sender: TObject);
procedure RemoveHazeMenuClick(Sender: TObject);
procedure ScriptingNewMenuClick(Sender: TObject);
procedure ClrbarMenuClick(Sender: TObject);
procedure UpdateMosaic(Sender: TObject);
procedure OnlineHelpMenuClick(Sender: TObject);
procedure OpenScript(scriptname: string; isShowScriptPanel: boolean = true);
procedure AddOverlayMenuClick(Sender: TObject);
procedure ScriptingOpenMenuClick(Sender: TObject);
procedure ScriptingRunMenuClick(Sender: TObject);
procedure ScriptingSaveMenuClick(Sender: TObject);
procedure ScriptingTemplatesMenuClick(Sender: TObject);
procedure ScriptFormVisible(vis: boolean);
procedure MakeList(var c: TClusters);
procedure UpdateLayerBox(NewLayers: boolean; NewVolumes: boolean = false);
function AddLayer(Filename: string): boolean;
procedure UpdateContrast (Xa,Ya, Xb, Yb: integer);
function AddBackground(Filename: string; isAddToRecent: boolean = true; isFromFormDrop: boolean = false): boolean;
procedure AboutMenuClick(Sender: TObject);
procedure BackColorMenuClick(Sender: TObject);
procedure ClipLabelClick(Sender: TObject);
procedure ColorEditorMenuClick(Sender: TObject);
procedure LayerContrastKeyUp(Sender: TObject; var Key: Word; Shift: TShiftState);
procedure UpdateVisibleBoxes(setMenuChecked: boolean = false);
procedure SetDisplayCheck();
procedure UpdateOpenRecent();
procedure OptimalMosaicPixels(out w,h: integer);
procedure AddOpenRecent(Filename: string);
procedure ResetDefaultsClick(Sender: TObject);
procedure DisplayMenuClick(Sender: TObject);
procedure FormDropFiles(Sender: TObject; const FileNames: array of String);
//procedure FormResize(Sender: TObject);
procedure PrefTrackChange(Sender: TObject);
procedure GraphPaint(Sender: TObject);
procedure GraphShow();
procedure ShaderDropChange(Sender: TObject);
procedure SharpenMenuClick(Sender: TObject);
//procedure SplitterMoved(Sender: TObject);
procedure SaveMenuClick(Sender: TObject);
procedure SetXHairPosition (lXmm,lYmm,lZmm: single; isUpdateYoke: boolean = false);
procedure UpdateShaderSettings(Sender: TObject);
procedure UpdateTimerTimer(Sender: TObject);
procedure ViewGPUMouseMove(Sender: TObject; Shift: TShiftState; X, Y: Integer);
procedure ViewGPUMouseUp(Sender: TObject; Button: TMouseButton; Shift: TShiftState; X, Y: Integer);
procedure ViewGPUMouseWheel(Sender: TObject; Shift: TShiftState; WheelDelta: Integer; MousePos: TPoint; var Handled: Boolean);
procedure OpenMenuClick(Sender: TObject);
//procedure ShaderMenuClick(Sender: TObject);
//procedure LayerColorDropChange(Sender: TObject);
procedure PickRenderDepth( X, Y: Integer);
procedure ViewGPUMouseDown(Sender: TObject; Button: TMouseButton; Shift: TShiftState; X, Y: Integer);
procedure ParamStr2Script();
procedure ViewGPUPrepare(Sender: TObject);
procedure ViewGPUPaint(Sender: TObject);
procedure ViewGPUDblClick(Sender: TObject);
procedure ViewGPUKeyPress(Sender: TObject; var Key: char);
procedure ViewGPUKeyDown(Sender: TObject; var Key: Word; Shift: TShiftState);
procedure ViewGPUKeyUp(Sender: TObject; var Key: Word; Shift: TShiftState);
procedure ViewGPUgKeyDown(Sender: TObject; var Key: Word; Shift: TShiftState);
procedure ViewGPUgResize(Sender: TObject);
procedure setShaderSliders;
procedure CutoutChange(Sender: TObject);
procedure OpenRecentMenuClick(Sender: TObject);
procedure OpenStandardMenuClick(Sender: TObject);
procedure CutoutMouseUp(Sender: TObject; Button: TMouseButton;
Shift: TShiftState; X, Y: Integer);
procedure LayerColorFromZero(Layer: integer; IsFromZero: boolean);
function SliceFrac : TVec3;
procedure SetRetina;
{$IFDEF MYPY}
function PyCreate: boolean;
function PyExec(): boolean;
{$IFDEF PY4LAZ}
procedure PyEngineAfterInit(Sender: TObject);
procedure PyIOSendData(Sender: TObject; const Data: AnsiString);
procedure PyIOSendUniData(Sender: TObject; const Data: UnicodeString);
procedure PyModInitialization(Sender: TObject);
{$ELSE}
procedure GotPythonData(str: UnicodeString);
{$ENDIF}
{$ENDIF}
procedure YokeMenuClick(Sender: TObject);
procedure YokeTimerTimer(Sender: TObject);
procedure voiUndo(isRefresh: boolean = false);
procedure SampleAlongLine(startMM, endMM: TVec3);
procedure MorphologyFill(Origin: TVec3; dxOrigin, radiusMM: int64; drawMode: int64);
procedure DrawIntensityFilter(rampAbove, rampBelow, drawMode: integer);
procedure ForceOverlayUpdate();
procedure ZoomBtnClick(Sender: TObject);
private
//
end;
var
GLForm1: TGLForm1;
implementation
{$R *.lfm}
{$IFDEF METALAPI}
const kExt = '.metal';
{$ELSE}
uses
{$IFDEF GRAPH}glgraph,{$ENDIF}
{$IFDEF COREGL}glcorearb,{$ELSE}{$IFNDEF Darwin}gl, {macos has macgl }{$ENDIF} glext,
{$ENDIF}
{$IFDEF LCLCocoa}glcocoanscontext,{$ENDIF}{$IFDEF CLRBAR}glclrbar, {$ENDIF}
{$IFDEF RETINA}retinahelper,{$ENDIF}
OpenGLContext, glvolume2, gl_core_utils {$IFDEF MYPY}{$IFDEF PY4LAZ}{$IFNDEF UNIX}, proc_py {$ENDIF}{$ENDIF}{$ENDIF};
const kExt = '.glsl';
{$ENDIF}
const
kNaNsingle: single = 1/0;
kNaN : double = 1/0;
{$IFDEF UNIX} //end of line
kEOLN = #10;
{$ELSE}
kEOLN = #13#10; //Windows CRLF
{$ENDIF}
kTab = #9;
var
gPrefs: TPrefs;
gPyRunning: boolean = false;
gMouseLimitLo, gMouseLimitHi : TPoint;
gMouse : TPoint = (x: -1; y: -1);
gMouseDrag: boolean = false;
gSliceMM : TVec3 = (x: 0; y: 0; z: 0);
Vol1: TGPUVolume;
isBusy: boolean = false;
isBusyCore: boolean = false;
vols: TNIfTIs;
gLandmark : TLandmark;
{$IFDEF METALAPI}
//isFormShown: boolean = false;
isPrepared: boolean = false;
ViewGPU1: TMetalControl;
{$IFDEF GRAPH}ViewGPUg: TMetalControl;{$ENDIF}
{$ELSE}
ViewGPU1: TOpenGLControl;
{$IFDEF GRAPH}ViewGPUg: TOpenGLControl;{$ENDIF}
{$ENDIF}
{$IFDEF GRAPH}gGraph: TGPUGraph;{$ENDIF}
{$IFDEF CLRBAR}gClrbar: TGPUClrbar;{$ENDIF}
{$IFDEF LCLCocoa}{$IFNDEF METALAPI}
{$DEFINE isCocoaOpenGL}
{$ENDIF}{$ENDIF}
{$IFDEF DBUG}
procedure DebugLn(str: string); //2022
begin
{$IFDEF UNIX}
writeln(str);
{$ENDIF}
end;
{$ENDIF}
procedure GenerateClustersCore(var v: TNIfTI; thresh, mm: single; method: integer; isDarkAndBright: boolean);
var
i: integer = 0;
v2: TNIfTI;
begin
GLForm1.ClusterView.tag := -1;
if (v.IsLabels) or (GLForm1.LayerList.Count < 2) then begin
//either atlas or only image loaded
v.GenerateClusters(thresh, mm, gPrefs.ClusterNeighborMethod, isDarkAndBright);
//GLForm1.ClusterView.visible := true;
exit;
end;
//not an atlas... see if one is loaded
v2 := nil;
while (i < GLForm1.LayerList.Count) and (v2 = nil) do begin
if not vols.Layer(i,v2) then exit;
if not v2.IsLabels then
v2 := nil;
i := i + 1;
end;
v.GenerateClusters(v2, thresh, mm, method, isDarkAndBright); //v2 is either nil or a label map
//GLForm1.ClusterView.visible := (v2 <> nil);
end;
var isDescending: boolean = false;
procedure TGLForm1.ClusterViewColumnClick(Sender: TObject; Column: TListColumn);
//https://www.delphitips.net/2008/04/10/sort-listview-by-clicking-on-columns/
var
i: integer;
begin
ClusterView.SortColumn := Column.Index;
//ClusterView.AutoSortIndicator:= true;
//Descending := not Descending;
isDescending := not isDescending;
//{$ifndef windows} //next lines require trunk or Lazarus >= 2.0.8
//{$IFDEF (LCL_FULLVERSION > 2080600)}
{$IF laz_fullversion >= 2000800}
for i := 0 to (ClusterView.ColumnCount -1) do begin
if (i = Column.Index) then continue;
ClusterView.Column[i].SortIndicator:= siNone;
end;
if isDescending then
ClusterView.Column[Column.Index].SortIndicator:= siDescending
else
ClusterView.Column[Column.Index].SortIndicator:= siAscending;
{$ENDIF}
//ClusterView.SortType := stData; //so
if ClusterView.SortDirection = sdDescending then
ClusterView.SortDirection := sdAscending
else
ClusterView.SortDirection := sdDescending;
end;
procedure TGLForm1.ClusterSaveClick(Sender: TObject);
var
contents,row: ansistring;
column: TListColumn;
item: TListItem;
i, j: integer;
dlg : TSaveDialog;
Txt: TextFile;
niftiVol: TNIfTI;
begin
contents := '';
row := '';
contents := 'MRIcroGL '+kVers+kEOLN;
//if vols.Layer(GLForm1.LayerList.ItemIndex,niftiVol) then
if vols.Layer(ClusterView.tag,niftiVol) then
contents += 'Notes: '+niftiVol.clusterNotes+kEOLN;
// header
for i := 0 to ClusterView.Columns.Count - 1 do
begin
column := TListColumn(ClusterView.Columns[i]);
if not column.Visible then
continue;
row += column.Caption;
if i < ClusterView.Columns.Count - 1 then
row += kTab;
end;
contents += row+kEOLN;
// items
for i := 0 to ClusterView.Items.Count - 1 do
begin
item := TListItem(ClusterView.Items[i]);
row := '';
for j := 0 to item.SubItems.Count do
begin
column := TListColumn(ClusterView.Columns[j]);
if not column.Visible then
continue;
if j = 0 then
row += item.Caption
else
row += item.SubItems[j - 1];
if j < item.SubItems.Count then
row += kTab;
end;
contents += row;
if i < ClusterView.Items.Count - 1 then
contents += kEOLN;
end;
if (Sender as TMenuItem).tag = 0 then begin
Clipboard.AsText:= contents;
exit;
end;
dlg := TSaveDialog.Create(self);
dlg.Title := 'Save table';
dlg.InitialDir := GetUserDir;//GetUserDir;
{$IFDEF Darwin}
if PosEx('.app', dlg.InitialDir) > 0 then
dlg.InitialDir := HomeDir(false);
{$ENDIF}
dlg.Filter := 'Text|*.txt';
dlg.DefaultExt := '.txt';
dlg.FilterIndex := 0;
if not dlg.Execute then begin
dlg.Free;
exit;
end;
AssignFile(Txt, dlg.FileName);
Rewrite(Txt);
WriteLn(Txt, contents);
CloseFile(Txt);
dlg.Free;
end;
{$IFDEF AFNI}
function AFNIjvLabel(statCode: integer): string;
begin
case statCode of
kFUNC_COR_TYPE: result := 'Correl';//// Correlation Coeff # Samples, # Fit Param, # Orts
kFUNC_TT_TYPE: result := 'T';// Student t Degrees-of-Freedom (DOF)
kFUNC_FT_TYPE: result := 'F';// F ratio Numerator DOF, Denominator DOF
kFUNC_ZT_TYPE: result := 'Normal';// Standard Normal -- none --
kFUNC_CT_TYPE: result := 'Chi';// Chi-Squared DOF
kFUNC_BT_TYPE: result := 'Beta';// Incomplete Beta Parameters "a" and "b"
kFUNC_BN_TYPE: result := 'Binomial';// # Trials, Probability per trial
kFUNC_GT_TYPE: result := 'Gamma';// Shape, Scale
kFUNC_PT_TYPE: result := 'Poisson';
else result := 'Other'
end;
end;
{$ENDIF}
function GetFloat(prompt: string; min,def,max: double): double;
var
PrefForm: TForm;
CancelBtn,OkBtn: TButton;
promptLabel: TLabel;
valEdit: TEdit;
begin
PrefForm:=TForm.Create(nil);
//PrefForm.SetBounds(100, 100, 512, 212);
PrefForm.AutoSize := True;
PrefForm.BorderWidth := 8;
PrefForm.Caption:='Value required';
PrefForm.Position := poScreenCenter;
PrefForm.BorderStyle := bsDialog;
//label
promptLabel:=TLabel.create(PrefForm);
promptLabel.Caption:= prompt;
if (min < max) then
promptLabel.Caption:= format('%s (range %0.3g..%0.3g)', [prompt, min, max]);
//promptLabel.Left := 8;
//promptLabel.Top := 12;
promptLabel.AutoSize := true;
promptLabel.AnchorSide[akTop].Side := asrTop;
promptLabel.AnchorSide[akTop].Control := PrefForm;
promptLabel.BorderSpacing.Top := 6;
promptLabel.AnchorSide[akLeft].Side := asrLeft;
promptLabel.AnchorSide[akLeft].Control := PrefForm;
promptLabel.BorderSpacing.Left := 6;
promptLabel.Parent:=PrefForm;
//edit
valEdit:=TEdit.create(PrefForm);
valEdit.Caption := FloatToStrF(def, ffGeneral, 8, 4);
//valEdit.Top := 42;
//valEdit.Width := PrefForm.Width - 16;
valEdit.Constraints.MinWidth:= 300;
valEdit.AutoSize := true;
valEdit.AnchorSide[akTop].Side := asrBottom;
valEdit.AnchorSide[akTop].Control := promptLabel;
valEdit.BorderSpacing.Top := 6;
valEdit.AnchorSide[akLeft].Side := asrLeft;
valEdit.AnchorSide[akLeft].Control := PrefForm;
valEdit.BorderSpacing.Left := 6;
valEdit.Parent:=PrefForm;
//Cancel Btn
CancelBtn:=TButton.create(PrefForm);
CancelBtn.Caption:='Cancel';
CancelBtn.AutoSize := true;
CancelBtn.AnchorSide[akTop].Side := asrBottom;
CancelBtn.AnchorSide[akTop].Control := valEdit;
CancelBtn.BorderSpacing.Top := 6;
CancelBtn.AnchorSide[akLeft].Side := asrLeft;
CancelBtn.AnchorSide[akLeft].Control := PrefForm;
CancelBtn.BorderSpacing.Left := 200;
CancelBtn.Parent:=PrefForm;
CancelBtn.ModalResult:= mrCancel;
//OK button
OkBtn:=TButton.create(PrefForm);
OkBtn.Caption:='OK';
OkBtn.AutoSize := true;
OkBtn.AnchorSide[akTop].Side := asrBottom;
OkBtn.AnchorSide[akTop].Control := valEdit;
OkBtn.BorderSpacing.Top := 6;
OkBtn.AnchorSide[akLeft].Side := asrRight;
OkBtn.AnchorSide[akLeft].Control := CancelBtn;
OkBtn.BorderSpacing.Left := 6;
OkBtn.Parent:=PrefForm;
OkBtn.ModalResult:= mrOK;
//OK button
{$IFDEF DARKMODE}
if gPrefs.DarkMode then GLForm1.SetFormDarkMode(PrefForm);
{$ENDIF}
PrefForm.ShowModal;
result := kNaN;
if (PrefForm.ModalResult = mrOK) then begin
result := StrToFloatDef(valEdit.Caption, def);
if (min < max) and (result < min) then
result := min;
if (min < max) and (result > max) then
result := max;
end;
FreeAndNil(PrefForm);
end; //GetFloat()
procedure TGLForm1.AfniPMenuClick(Sender: TObject);
{$IFDEF AFNI}
var
v: TNIfTI;
jv: integer;
s: string;
df0, df1, p, thresh: double;
begin
vols.Layer(LayerList.ItemIndex,v);
if v = nil then exit;
if length(v.afnis) < v.VolumeDisplayed then exit;
jv := v.afnis[v.VolumeDisplayed].jv;
s := AFNIjvLabel(jv);
if (jv <> kFUNC_TT_TYPE) and (jv <> kFUNC_FT_TYPE) then begin
showmessage('Current version only supports p-values for T and F tests, not "'+s+'"');
exit;
end;
df0 := v.afnis[v.VolumeDisplayed].param[0];
df1 := v.afnis[v.VolumeDisplayed].param[1];
if jv = kFUNC_TT_TYPE then
s := format('%s (%d)', [s, round(df0)])
else
s := format('%s (%d,%d)', [s, round(df0), round(df1)]);
p := GetFloat('Threshold at uncorrected p-value for '+s, 0,0.05,0);
if jv = kFUNC_TT_TYPE then begin
p := p / 2; //2 tails
thresh := inverset(p, df0); //pTdistrInv(round(df0), p);
end else
thresh := inversef(p, round(df0), round(df1));//pFdistrInv(round(df0), round(df1), p);
LayerChange(LayerList.ItemIndex, -1, -1, thresh, thresh);
end;