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localcolabfold raise error "malloc(): invalid size (unsorted)" during expandaln #691

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yanj14jy15 opened this issue Mar 9, 2025 · 0 comments

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@yanj14jy15
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I was testing localcolabfold 1.5.5 with a list of protein complexes. colabfold_search with GPU seems to produce all a3m files without any issues but when I tried to use CPU, I got errors "corrupted size vs. prev_size".

Then I tried individual complexes and some worked while others didn't. I got error message "malloc(): invalid size (unsorted)" during expandaln. I've tried with or without indices, indices built with different hardware configurations and mmseqs15 but none of them resolved the issue. An example is attached.

colabfold_search-62781089.txt
complex2.txt
localcolabfold_msa.txt

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