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Copy path1kg-phase1.vcf
19 lines (19 loc) · 6.73 KB
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1kg-phase1.vcf
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##fileformat=VCFv4.1
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT
2 32145 1kg-phase1:2:32146 CATGATCTCACTTGTATGTGGAATCTAGAAAAGTCAGACTCATAAAAACAAAGAGTAGAATGCTGGTTACCAGGGGCTGAGTGGGAGGCGGGCGGGAAATGAGATGCTGGTCCAAAGATACAAGGTTTCAGTTTTAAGATGAATACGTTCCGGGGATCTAAGGTACAGCATGGCGACTGTAGTTAATAATACTGTACTGTTTACTTGAAATTTGCTAAGACAGTAGATCTTATGCATCTGCATCTCTCTCTCTCTCTCTCACACACACACACAATAGTTAACTGTGTGAGGTGATGTGTTAATTAACTTGATTGTGGTAATTATTTTACTATGTATGCATATATGAAGTAATTACATTGTAAACCTTGGATAAACACAATTTTTATTTGTCAATTATTCCCTGATAAAACTAGAAGAAGAAAGCCCTACTTTGCATGTTTGTTCTAACTGTTCCTCCTTCGCCTTCAGTTAAGTAAACATGGGGATGAGGGTGGGACAGAGATGTGGAGGAAATGAAGTTAAGATGAAGTCTTCATCCACCATTTATTGAACATCTACTGGAAATGACCTGTAGTAGTCCATTTTACTTTGCTATAAATTAACATCTAAGGCTCTCTATGGAGGCCGGGGAGGCTGGATGGGACAAAAAGGCAGATGAAGGACAAATTCTGATTCTCTCTTCTGGAGTTGGGGCGCCTTTCTTTTCCTGCCCTTGGATGTCAGAGCTCCAAGGTCTCTGGCTTTTGGATTCCAGGACTTGCACTAGTGCTCCCGACCCCTGCCCCCTAACCTCCACCCAGCCTTTTTGGCCTTCAGCCTTGGACTGAGAGTTACACCATCTGCTTCCCTGGATCTGAGGCATTTGGACTTGAACTGAGCCATGCTACCGTCTTCCCTGGTTCCCCAGCTTGCAGATGACCTGTTGTGGGACTCCTTAGCCTCTCCAACCAAGTGCGCCAATTACCCTAAACAATCCCTTCACATGTATCTCTCTCTCCCTCTCTCACTCTAGATATATAGATATAGATATATACATAAATATTCTATTGGTTCTGACCCTCTGGAGAACCCTGACTAAAACATATGGTAAGTTGAAAATATAAACCGGTTCACAAATTATTTAAACAAACTAGTGAATGGTATACATTGAATCCTTAGGGGGCTAATAGGGTTAGAATAATAATTACTACCATGGATTGGGTGCCTCCTTTGTGCTCAGTGCTTTTAAATACGTCTCTATCCTCCAGTCTTCATGGCCACCTTCTAACAGATGAGAAAACTGAGTGGCGTTTAATGTGCTCCAGGTCAACAGCCCCTCAGCGCATTACTCTGACCTGCTGTGGTAATTCCATGATCCTAAAATGTTTGGCTTCTATGAGCCTCGACTTCAGTGTGTACCCACAGTACTTTGTACACAGATACTGACACTCCTTTTCAGAGTTCCAAGTTTAATCTCTGTTGTAAATGCATATTTGCTAGAAAATGTTCTTCCTTGGAGAAGGACCTGTAACTCTCTGACAGCGTTCCTGACACTACACCAGGAACGCTGGCCATAGTGACAACGTCGATGTACCCTGTGATAGGGGTTAGCATTAGGTGTGTAATGCTGAGTAATGCAGGCAGGGAGGCAACAACTTCCTGTTACCTTCAAGCTAGAATTGCTCAGTCAACCCAAAGCCACCGGGAAAAGGTGAGTAACGCTTCCTTCCTGCCTCTGCCTGCACGGTCAAATTGTTGACAGTTGGCTCAGTTTCTCTTCTCACCTGTAAAAGGATAATATTTGTGTAGACTTGGAACACATGCAAGAATCTGCAAGTAGATATTTGGAATGTGCATGTCTTGGCCTTTTCTTCCACTGTTGCTGGAAAGAAACCCAAAGAACTTAAGCTGTGCTGAACTTTCCGGTACTTCAAAGTAAACTTAAAGGATTTCCTGTTCTTTTTACAACTGTGGTCATTTCCCATTTACCTAAAATCGATATTAGCCACCACTGAAATAATCATAGTTCTGCTAGACTTCTCTGAGGTGAGCTAGAAGGTCTTGGACTTCGAATCCAGACTTAGGATTCCATGATATACAAGAGGGGGTTGTACTTGAAATTTACAACTCTGTAGTGGAACTTGTGCCCCAGCAAATGGGCCATCAGCCAGTTCAACAGGTTGCCGCAGTGTGGACCTAGTCAGCACTGCCCTGAGCTCTCTGGAATAGTTTGCTTTCCCTCAGATTTTCTCTTTATTGCTATTCTTAAAACACATATCATCTTACATAAAATTATAAACATAAACTGAACCATGATGGCCTGTCCTGCAATATGAAAATCGGCATGCTGCTTTAAAATGTGTATGTGTGTGATGTTGGGGCTGCATTCTTATCATCAAGGTACCTCCGTGTCACCGTGTCATTCAGTGGATGGTAACGTGGGATCTTCAGGTAATTCTGGAGTGGCATTTTGTATCAGAATCCATGCATTTGGGTATTGATCTGCTGAATCAGTTATTCCCTTGAGAAGTTATGACATCTTAAGCATTCTGGTTGGCATTGAATTGTTCTCATAAACCAGCACAGAGAGCGAATAGAGCAGACTTTGGAGCCAGGCAGATTTAGGTTCAAATTCTTACTCTTCTACTTACTAGTTCTTTGACCTAGGCAGGTAGTGGATTTCTCCACACCTTTGCTCCCTCATACATAAAATG C . PASS EUR_AF=0.0299999993294;AVGPOST=0.996500015259;AC=0;HOMLEN=2;END=34838;AF=0.00999999977648;CIPOS=-116,41;CIEND=-77,76;AN=6;LDAF=0.0125000001863;SVTYPE=DEL;VT=SV;THETA=0.00089999998454;SVLEN=-2692;HOMSEQ=AT;RSQ=0.883899986744;ERATE=0.000399999989895
2 33100 1kg-phase1:2:33101 G A . PASS AA=G;AVGPOST=0.998600006104;ERATE=0.000399999989895;AFR_AF=0.00999999977648;LDAF=0.00410000002012;AF=0.00370000000112;AMR_AF=0.00279999990016;AC=0;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0010000000475;RSQ=0.847100019455
2 33105 1kg-phase1:2:33106 T C . PASS AA=T;AVGPOST=0.999599993229;AC=0;LDAF=0.000699999975041;ASN_AF=0.00170000002254;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0010000000475;RSQ=0.708199977875
2 33145 1kg-phase1:2:33146 C T . PASS AA=C;LDAF=0.00089999998454;AC=0;AVGPOST=0.999000012875;ASN_AF=0.00170000002254;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00279999990016;RSQ=0.673799991608
2 33158 1kg-phase1:2:33159 T TATATAG . PASS AA=.;AVGPOST=0.998899996281;AC=0;AF=0.0299999993294;ASN_AF=0.0399999991059;AFR_AF=0.070000000298;AMR_AF=0.00999999977648;ERATE=0.000399999989895;AN=6;LDAF=0.0335000008345;VT=INDEL;THETA=0.00089999998454;RSQ=0.985499978065;EUR_AF=0.019999999553
2 33225 1kg-phase1:2:33226 C T . PASS AA=C;AVGPOST=0.999300003052;ERATE=0.000399999989895;LDAF=0.000699999975041;ASN_AF=0.00170000002254;AF=0.000500000023749;AC=0;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00089999998454;RSQ=0.564599990845
2 33229 1kg-phase1:2:33230 T C . PASS AA=T;AVGPOST=0.999599993229;AC=0;AFR_AF=0.00999999977648;LDAF=0.00249999994412;AF=0.00230000005104;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00079999997979;RSQ=0.923900008202
2 33237 1kg-phase1:2:33238 T A . PASS AA=T;AVGPOST=0.998799979687;ERATE=0.000399999989895;LDAF=0.00109999999404;ASN_AF=0.00170000002254;AF=0.000500000023749;AC=0;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.000500000023749;RSQ=0.507700026035
2 33251 1kg-phase1:2:33252 G A . PASS AA=G;AVGPOST=0.999400019646;ERATE=0.000399999989895;AFR_AF=0.00200000009499;LDAF=0.00079999997979;AF=0.000500000023749;AC=0;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00150000001304;RSQ=0.625899970531
2 33426 1kg-phase1:2:33427 G A . PASS AA=G;AVGPOST=0.999599993229;AC=0;LDAF=0.000500000023749;ASN_AF=0.00170000002254;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00109999999404;RSQ=0.645299971104
2 33429 1kg-phase1:2:33430 T G . PASS AA=T;AVGPOST=0.999000012875;ERATE=0.000399999989895;LDAF=0.00190000003204;ASN_AF=0.00999999977648;AF=0.00139999995008;AC=0;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00130000000354;RSQ=0.769900023937
2 33432 1kg-phase1:2:33433 C A . PASS AA=C;LDAF=0.0428000018001;AC=0;AFR_AF=0.180000007153;AVGPOST=0.999199986458;AF=0.0399999991059;AMR_AF=0.00999999977648;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00150000001304;RSQ=0.991999983788
2 33581 1kg-phase1:2:33582 A G . PASS AA=A;AVGPOST=0.999899983406;AC=0;AFR_AF=0.00200000009499;LDAF=0.000500000023749;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.001200000057;RSQ=0.875999987125
2 33623 1kg-phase1:2:33624 G T . PASS AA=G;AVGPOST=0.999800026417;AC=0;LDAF=0.000600000028498;ASN_AF=0.00170000002254;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.000699999975041;RSQ=0.817799985409
2 33624 1kg-phase1:2:33625 A G . PASS AA=A;LDAF=0.000699999975041;AC=0;AVGPOST=0.999499976635;ASN_AF=0.00170000002254;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00089999998454;RSQ=0.685000002384
2 33649 1kg-phase1:2:33650 C T . PASS AA=C;LDAF=0.0010000000475;ERATE=0.000399999989895;AFR_AF=0.00410000002012;AVGPOST=0.999199986458;AF=0.00089999998454;AC=0;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.00109999999404;RSQ=0.674899995327
2 33750 1kg-phase1:2:33751 G A . PASS AA=G;AVGPOST=0.999599993229;AC=0;AFR_AF=0.00200000009499;LDAF=0.000600000028498;AF=0.000500000023749;ERATE=0.000300000014249;AN=6;VT=SNP;SNPSOURCE=LOWCOV;THETA=0.0038999998942;RSQ=0.753300011158