Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.
Python 6
Repositories
- aind-behavior-video-transformation Public
Library to manage compression and transformation of behavior videos
AllenNeuralDynamics/aind-behavior-video-transformation’s past year of commit activity - Aind.Behavior.ExperimentLauncher Public
Source for for a minimal framework that can be used to build experimental interfaces
AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity - aind-data-upload-utils Public
Library of utility methods to facilitate file uploads, such as partitioning directories.
AllenNeuralDynamics/aind-data-upload-utils’s past year of commit activity - aind-data-transfer-service Public
FastAPI service to run data compression and transfer jobs on the hpc
AllenNeuralDynamics/aind-data-transfer-service’s past year of commit activity - aind-neuroglancer-game Public
AllenNeuralDynamics/aind-neuroglancer-game’s past year of commit activity - aind-ophys-extraction-suite2p Public
Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.
AllenNeuralDynamics/aind-ophys-extraction-suite2p’s past year of commit activity
