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One case one Multiqc report #515

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moonso opened this issue Jun 13, 2018 · 3 comments
Closed

One case one Multiqc report #515

moonso opened this issue Jun 13, 2018 · 3 comments

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@moonso
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moonso commented Jun 13, 2018

Hi, as far as I can see at the moment there is one MultiQC report produced for each individual. Is it possible to create one report per case or merge the reports?
@henrikstranneheim
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Should not be a problem! Glad to see we are finally utilising multiqc 😄!

henrikstranneheim added a commit that referenced this issue Jun 15, 2018
@henrikstranneheim
One case one Multiqc report. Fix #515
a4bec7e 
- Added case as default for multiqc report generation
- Added option to also generate per sample reports with 'multiqc_per_sample'
- Added log of report paths for downstream pickup into housekeeper
@henrikstranneheim
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Will look like this in qc_sample_info:

 multiqc:
    643594-200M:
      path:PATH/643594-200M/analysis/643594-200M/multiqc/multiqc_report.html
    ADM1059A1:
      path: PATH/643594-200M/analysis/ADM1059A1/multiqc/multiqc_report.html

Control report per sample using option: "--multiqc_per_sample"

@henrikstranneheim
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Done

@henrikstranneheim henrikstranneheim mentioned this issue Nov 13, 2018
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@moonso @henrikstranneheim