Expansion Hunter module, #442 #443
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| ## : $min_anchor_mapq => Min MAPQ of an in-repeat read anchor | ||
| ## : $min_baseq => Min base quality of a high confidece base call | ||
| ## : $min_score => Min weigheted matching score | ||
| ## : $read_depth => Expansion Hunter will not calciulate read depth if set |
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calciulate -> calculate
| unix_write_to_file( | ||
| { | ||
| FILEHANDLE => $FILEHANDLE, | ||
| commands_ref => \@commands, |
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| analysis_expansionhunter( | ||
| { | ||
| parameter_href => $parameter_href, |
| $log->info(q{[ExpansionHunter]}); | ||
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| my $cnvnator_program_name = q{expansionhunter}; | ||
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Ooos, the pipeline recipe wasn't supposed to be a part of this pull request. (To eager with |
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I wondered about that. Good plan! |
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Alright so I will not merge this until you say so! |
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I think it is OK to merge it now. Since $active_parameter_href->{pexpansionhunter} isn't defined anywhere yet it shouldn't interfere with anyone else's work. Would be nice to get this part out of the way. |
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👍 |
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