Code listing

JRCLUST main functions

• jrc.m: JRCLUST wrapper. It calls the latest version (currently jrc3.m)
• jrc3_gui.m: Main GUI for JRCLUST (called by "jrc gui" or "jrc3 gui").
• jrc3.m: JRCLUST ver3
• jrc3_test.m: Test scripts for jrc3.m
• jrc2.m: JRCLUST ver2
• jrc1.m: wrapper for jrclust.m
• jrclust.m: JRCLUST ver1

CUDA codes (for nVIDIA GPU)

• jrc3_cuda_rho.cu: Compute the local density Rho used in DPCLUS
• jrc3_cuda_delta.cu: Compute the distance separation Delta used in DPCLUS

Utility functions

• plotSpikeRaster.m: plot spike rasters. Downloaded from file exchange
• fft_clean.m: fft-based de-noising function
• filtfilt_chain.m: apply filter chain (forward-backward filter)
• multiplot.m: plot multiple traces fast by using a single line object
• clusterVerify.m: verify clusters using ground-truth dataset
• mouse_figure.m: use a mouse wheel to zoom and pan Matlab figures
• get0.m: get the master struct (same as get(0, 'UserData').

Imported packages

Kilosort

• kilosort.m
• kilosort/: Kilosort related codes

Mountain sort

• isosplit.m: Isosplit related code (under development)

Neuroshare library (support for .ns5 format)

• neuroshare/: Contains neuroshare import codes