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corset: undefined reference to `deflateInit2_' #60

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corset: undefined reference to `deflateInit2_' #60

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@sjackman sjackman commented Jun 2, 2016

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@sjackman sjackman self-assigned this Jun 2, 2016
@sjackman sjackman mentioned this pull request Jun 3, 2016
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sjackman commented Jun 3, 2016 

g++ corset_fasta_ID_changer.cc -o corset_fasta_ID_changer
/usr/bin/g++-4.8 -I/home/linuxbrew/.linuxbrew/opt/htslib/lib -I/home/linuxbrew/.linuxbrew/opt/samtools/include/bam -O3 -ffast-math -I./ -Os -w -pipe -march=core2 -isystem/home/linuxbrew/.linuxbrew/include -std=c++0x -DUNORDEREDMAP corset.o Cluster.o MakeClusters.o Transcript.o Read.o -o corset -L/home/linuxbrew/.linuxbrew/opt/samtools/lib -L/home/linuxbrew/.linuxbrew/lib -Wl,--dynamic-linker=/home/linuxbrew/.linuxbrew/lib/ld.so -Wl,-rpath,/home/linuxbrew/.linuxbrew/lib -lpthread -lbam -lz  /home/linuxbrew/.linuxbrew/opt/htslib/lib/libhts.a
/home/linuxbrew/.linuxbrew/opt/htslib/lib/libhts.a(bgzf.o): In function `bgzf_write_init':
/tmp/htslib-20160602-27442-18wf48h/htslib-1.3.1/bgzf.c:209: undefined reference to `deflateInit2_'

@sjackman sjackman removed their assignment Jun 3, 2016
@sjackman sjackman changed the title corset: Build a bottle for Linuxbrew corset: undefined reference to `deflateInit2_' Jun 3, 2016
@sjackman sjackman closed this Jan 2, 2018
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