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Adds fixture to download atlases for test_validation.py #498

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merged 2 commits into from
Feb 12, 2025
Merged

Adds fixture to download atlases for test_validation.py #498

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13465a0
Add fixture to ensure atlases are available locally for test_validati…
IgorTatarnikov Feb 11, 2025
e52f8fd
Merge branch 'main' into setup-validation-atlases
IgorTatarnikov Feb 11, 2025
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21 changes: 21 additions & 0 deletions tests/atlasgen/conftest.py
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Original file line number Diff line number Diff line change
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from pathlib import Path

import pytest

from brainglobe_atlasapi import BrainGlobeAtlas


@pytest.fixture(autouse=True)
def setup_preexisting_local_atlases():
"""Automatically setup all tests to have three downloaded atlases
in the test user data."""
preexisting_atlases = [
("example_mouse_100um", "v1.2"),
("allen_mouse_100um", "v1.2"),
("kim_dev_mouse_e11-5_mri-adc_31.5um", "v1.3"),
]
for atlas_name, version in preexisting_atlases:
if not Path.exists(
Path.home() / f".brainglobe/{atlas_name}_{version}"
):
_ = BrainGlobeAtlas(atlas_name)