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Add Y5 to orange display color group #224

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Jun 14, 2024
Merged

Add Y5 to orange display color group #224

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ed09554
add Y5 to orange display color group
ziw-liu Jun 13, 2024
4052727
fix ome-zarr-py CI issue
ziw-liu Jun 13, 2024
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2 changes: 1 addition & 1 deletion iohub/display_utils.py
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Expand Up @@ -26,7 +26,7 @@
"blue": ["Blue", "DAPI", "BFP", "Hoechst"],
"red": ["Red"],
"yellow": ["Yellow", "Cy3"], # Emission around 540-570 nm
"orange": ["Orange", "Cy5"], # emission around 650-680 nm
"orange": ["Orange", "Cy5", "Y5"], # emission around 650-680 nm
}


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2 changes: 1 addition & 1 deletion setup.cfg
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Expand Up @@ -51,7 +51,7 @@ dev =
hypothesis>=6.61.0
requests>=2.22.0
wget>=3.2
ome-zarr>=0.6.1
ome-zarr>=0.9.0
doc =
matplotlib
numpydoc>=1.1.0
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2 changes: 1 addition & 1 deletion tests/ngff/test_ngff.py
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Expand Up @@ -199,7 +199,7 @@ def test_write_ome_zarr(channels_and_random_5d, arr_name):
# round-trip test with the offical reader implementation
ext_reader = Reader(parse_url(dataset.zgroup.store.path))
node = list(ext_reader())[0]
assert node.metadata["name"] == channel_names
assert node.metadata["channel_names"] == channel_names
assert node.specs[0].datasets == [arr_name]
assert node.data[0].shape == random_5d.shape
assert node.data[0].dtype == random_5d.dtype
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