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OrthoFinder v2.3.7
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@davidemms davidemms released this 22 Oct 16:47
· 263 commits to master since this release
2.3.7
87d3c77

Improvements:

  • OrthoFinder now includes all it's dependencies so you should be able to just download it, unpack it and run
  • Identify species-specific orthogroups
  • Automatically root trees in 'Gene_Trees' directory and include support values if available (trees in 'Resolved_Gene_Trees' directory were already rooted)

Fixes:

  • Resolve issue with Sophos causing final ortholog inference step to take a very long time (Issue #294)
  • Resolve MMseqs issue with long sequences (>65535 AA) (Issue #269)
  • Improve parallelisation of DendroBLAST gene trees
  • Fix writing of phylogenetically misplaced genes to file (Issue #288)
  • Skip missing trees for STAG (Issue #293)
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