Description

yamet is yet another methylation entropy tool.

yamet is under development! 🎊

Please also check (probably side branches of):

• https://github.com/emsonder/MethQuant
• https://github.com/emsonder/MethQuant-analysis

Repository

• method: yamet code. See our releases (including binaries)
• workflow: yamet applications, including simulations
• .github/workflows and test: testing
• old: archived codebase from old version to be removed

Installation

Brew

yamet can be installed via brew on MacOS and Ubuntu

brew tap atchox/brew

# stable version
brew install yamet

# or build latest version from source
brew install --HEAD yamet

Compiled Binaries

Compiled binaries can be downloaded from the releases page.

Build from source

git clone https://github.com/imallona/yamet.git
cd yamet/method
bash build.sh
./build/yamet --help

How to run the workflow

Lorem ipsum

cd workflow
snakemake --use-conda --cores 1

License

GPLv3