v0.2.4

Bump version to 0.2.4

v0.2.3

Update settings.ini (#50)

v0.2.2

Set tifffile==2022.4.8

v0.2.1

-- Bug fixes
-- Adding Code-based Tutorial (https://matjesg.github.io/deepflash2/tutorial_monuseg.html)

v0.2.0

New Features

• new features (#42), thanks to @matjesg

  • Multiclass GT Estimation, closes #34
  • Torchscript ensemble class for inference / tta adjusted
  • ONNX export possible

• Major changes

  • Different classes for training (EnsembleLearner) and Inference (EnsemblePredictor)
  • Normalization based on uin8 images (0...255)

• Instance segmentation metrics (#32), thanks to @matjesg

  • Instance segmentation metrics for GT estimation and prediction

Trained models for deepflash2 paper

model_library

nbdev update

v0.1.8

• Dependency fix (opencv-python-headless>=4.1.1,<4.5.5)
• Minor improvements and fixes

v0.1.7

• Fixes bug when predicting on new data.

Source data for the deepflash2 paper

paper_source_data

readme and error handling

v0.1.6

• Removing git dependency for cellpose installation.