Can't open Micasense using Jupyter Notebook #96
Comments
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That appears to be a jupyter issue if jupyter isn't starting. I haven't
seen that before. It doesn't appear to be related to any of the code in
this repository.
…On Sat, Nov 23, 2019, 18:17 mingbo ***@***.***> wrote:
The installation followed the guide, but the following error was prompted
when starting the environment:
Traceback (most recent call last):
File "D:\anaconda3\envs\micasense\Scripts\jupyter-notebook-script.py",
line 10, in
sys.exit(main())
File
"D:\anaconda3\envs\micasense\lib\site-packages\jupyter_core\application.py",
line 268, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File
"D:\anaconda3\envs\micasense\lib\site-packages\traitlets\config\application.py",
line 663, in launch_instance
app.initialize(argv)
File
"<D:\anaconda3\envs\micasense\lib\site-packages\decorator.py:decorator-gen-7>",
line 2, in initialize
File
"D:\anaconda3\envs\micasense\lib\site-packages\traitlets\config\application.py",
line 87, in catch_config_error
return method(app, *args, **kwargs)
File
"D:\anaconda3\envs\micasense\lib\site-packages\notebook\notebookapp.py",
line 1679, in initialize
self.init_webapp()
File
"D:\anaconda3\envs\micasense\lib\site-packages\notebook\notebookapp.py",
line 1442, in init_webapp
self.http_server.listen(port, self.ip)
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\tcpserver.py",
line 152, in listen
self.add_sockets(sockets)
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\tcpserver.py",
line 165, in add_sockets
self._handlers[sock.fileno()] = add_accept_handler(
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\netutil.py",
line 279, in add_accept_handler
io_loop.add_handler(sock, accept_handler, IOLoop.READ)
File
"D:\anaconda3\envs\micasense\lib\site-packages\tornado\platform\asyncio.py",
line 99, in add_handler
self.asyncio_loop.add_reader(fd, self._handle_events, fd, IOLoop.READ)
File "D:\anaconda3\envs\micasense\lib\asyncio\events.py", line 501, in
add_reader
raise NotImplementedError
NotImplementedError
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It appears that some change in python 3.8 broke tornado (one of the packages jupyter uses) according to tornadoweb/tornado#2608 I just changed the micasense_conda_env.yml to pin python to 3.7, which will hopefully fix this until they get the upstream issues sorted out. To downgrade to python 3.7, it will be necessary to need to delete the micasense conda environment, then run in your anaconda window, and then re-create the micasense environment. and finally activate the re-created environment |
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Thank you very much! I will try it. |
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The method you provided worked verywell. I have rebuilded the environment. But there is a new problem. ModuleNotFoundError Traceback (most recent call last) ModuleNotFoundError: No module named 'micasense' |
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Are you running `jupyter notebook .` from the imageprocessing directory
that contains the micasense folder?
What happens when you run `pytest`?
…On Sat, Nov 23, 2019, 21:32 mingbo ***@***.***> wrote:
The method you provided worked verywell. I have rebuilded the environment.
But there is a new problem.
When i try to runnig the sample program provided in the web page:
"MicaSense Image Processing Setup". The step "Testing image reading and
panel detection", Error message like this:
ModuleNotFoundError Traceback (most recent call last)
in
----> 1 from micasense.image import Image
2 imagePath = os.path.join('.','data','0000SET','000')
3 imageName = glob.glob(os.path.join(imagePath,'IMG_0000_1.tif'))[0]
4
5 img = Image(imageName)
ModuleNotFoundError: No module named 'micasense'
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I completely uninstalled the Micasense environment and deleted the folders，then reinstalled the Micasense environment with Git clone and Python commands. Everything is all right now. Thank you for your help. |
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I completely uninstalled the Micasense environment and deleted the folders，then reinstalled the Micasense environment with Git clone and Python commands. Everything is all right now. Thank you for your help. |
The installation followed the guide, but the following error was prompted when starting the environment:
Traceback (most recent call last):
File "D:\anaconda3\envs\micasense\Scripts\jupyter-notebook-script.py", line 10, in
sys.exit(main())
File "D:\anaconda3\envs\micasense\lib\site-packages\jupyter_core\application.py", line 268, in launch_instance
return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
File "D:\anaconda3\envs\micasense\lib\site-packages\traitlets\config\application.py", line 663, in launch_instance
app.initialize(argv)
File "<D:\anaconda3\envs\micasense\lib\site-packages\decorator.py:decorator-gen-7>", line 2, in initialize
File "D:\anaconda3\envs\micasense\lib\site-packages\traitlets\config\application.py", line 87, in catch_config_error
return method(app, *args, **kwargs)
File "D:\anaconda3\envs\micasense\lib\site-packages\notebook\notebookapp.py", line 1679, in initialize
self.init_webapp()
File "D:\anaconda3\envs\micasense\lib\site-packages\notebook\notebookapp.py", line 1442, in init_webapp
self.http_server.listen(port, self.ip)
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\tcpserver.py", line 152, in listen
self.add_sockets(sockets)
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\tcpserver.py", line 165, in add_sockets
self._handlers[sock.fileno()] = add_accept_handler(
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\netutil.py", line 279, in add_accept_handler
io_loop.add_handler(sock, accept_handler, IOLoop.READ)
File "D:\anaconda3\envs\micasense\lib\site-packages\tornado\platform\asyncio.py", line 99, in add_handler
self.asyncio_loop.add_reader(fd, self._handle_events, fd, IOLoop.READ)
File "D:\anaconda3\envs\micasense\lib\asyncio\events.py", line 501, in add_reader
raise NotImplementedError
NotImplementedError
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