Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Use local storage account for mutect integration test #720

Merged
merged 9 commits into from
Oct 18, 2023

Conversation

MattMcL4475
Copy link
Contributor

@MattMcL4475 MattMcL4475 commented Oct 18, 2023

Updates mutect to use a storage account in the same region as the batch account.

#721

Note: branch will be updated to main before merge

@MattMcL4475 MattMcL4475 changed the title Use local storage account for integration tests Use local storage account for mutect integration test Oct 18, 2023
@MattMcL4475 MattMcL4475 requested a review from BMurri October 18, 2023 16:39
Copy link
Collaborator

@BMurri BMurri left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This might not be the same workflow after this change. There are several differences between https://[raw.githubusercontent.com/microsoft/gatk4-somatic-snvs-indels-azure/az2.7.0/mutect2.inputs.json](https://raw.githubusercontent.com/microsoft/gatk4-somatic-snvs-indels-azure/az2.7.0/mutect2.inputs.json) and src/TriggerService.Tests/test-wdls/mutect2/mutect2.inputs.json that look material to me.

This is in addition to my two clarifications below.

@MattMcL4475 MattMcL4475 merged commit 7c4bc96 into main Oct 18, 2023
@MattMcL4475 MattMcL4475 deleted the task/move-mutect-to-south-central branch October 18, 2023 23:24
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants