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Use vector of integer for per-thread bool indicators (backport) #1455

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merged 85 commits into from
May 25, 2020
+1,279 −872
Merged

Use vector of integer for per-thread bool indicators (backport) #1455

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2e36fcf
same commit as 2890ca6a3cf125e0502b3e01744f5ad5e5a88a7f in PR #1442
suku248 Feb 25, 2020
dcd0ab0
Apply suggestions from code review
suku248 Feb 27, 2020
fe061cd
Remove friend declaration
suku248 Feb 27, 2020
167b0cd
Remove extra thread barriers
suku248 Feb 27, 2020
3074f48
Move setters and getters of BoolIndicatorUInt64 to header file
suku248 Feb 27, 2020
1436258
Add documentation
suku248 Feb 27, 2020
0f2d1e1
Fix misuse of outdated variable that led to an impossible condition
jakobj Feb 6, 2020
5516e8a
Refactor SendBufferPosition, fail on query with rank outside of range
jakobj Feb 10, 2020
1b29655
Use proper delete[] and atomic read in CompletedChecker
jakobj Feb 12, 2020
8890396
Merge pull request #1464 from jasperalbers/nest-2.20.1-backport-PR-#1428
heplesser Mar 13, 2020
561a6c1
Merge pull request #1462 from jasperalbers/nest-2.20.1-backport-PR-#1416
heplesser Mar 13, 2020
654d290
Merge pull request #1463 from jasperalbers/nest-2.20.1-backport-PR-#1421
heplesser Mar 13, 2020
37b3639
Changes taken from PR #1324
steffengraber Mar 17, 2020
a8d593b
Added boost
steffengraber Mar 17, 2020
b29323f
Added right version for '.deb' building
steffengraber Mar 17, 2020
ba9dfad
Update example in mailing_list_guidelines.rst
sarakonradi Mar 17, 2020
b76765b
Update hill_tononi_Vp.ipynb
sarakonradi Mar 17, 2020
d42113e
Update NEST 2.20.1 in hill_tononi_Vp.rst
sarakonradi Mar 17, 2020
1d21590
Update NEST 2.20.1 in hill_tononi_Vp.py
sarakonradi Mar 17, 2020
2ebcbf3
Updated regarding PR #1324
steffengraber Mar 18, 2020
28b6df4
Updates download links for VM
steffengraber Mar 18, 2020
bcb7ab8
Improved wrong version number
steffengraber Mar 18, 2020
d4442df
Removed PEP8 problem
steffengraber Mar 18, 2020
fc0fa1e
Change ref to doc in macOS link
sarakonradi Mar 30, 2020
cfb3084
Change mac_manual to mac_install
sarakonradi Mar 30, 2020
883fd30
Updated CMakeLists and iterator_pair for MyModule compatibility
hakonsbm Apr 15, 2020
a0d0917
Merge pull request #1514 from hakonsbm/mymodule_2.20.1
heplesser Apr 20, 2020
fdd3b35
Combine entry for /debian and /.
steffengraber Apr 22, 2020
8c0eb9c
Update doc/installation/index.rst
steffengraber Apr 22, 2020
ad09f44
Add regula falsi method, correct equation for calculation of membrane
stinebuu Mar 20, 2020
57a81ef
use exp instead of expm1*x + x
stinebuu Mar 24, 2020
6dd8ebe
gamma_{ex, in, sq_ex, sq_in} no longer needed as we use propagator_*
stinebuu Mar 24, 2020
dfc2a75
Throw exception when Regula falsi method does not converge.
stinebuu Mar 24, 2020
40a7e21
Update output of tests as the test does not test alpha_canon.
stinebuu Mar 24, 2020
3536357
Use Regula Falsi in iaf_psc_exp_ps instead of Bisectioning
stinebuu Mar 24, 2020
dad2d1f
Use exp()*x instead of expm1()*x + x in iaf_psc_exp_ps
stinebuu Mar 24, 2020
82e13fb
Use Regula Falsi method instead of Bisectioning for
stinebuu Mar 24, 2020
47188a7
Use propagator functions, and exp()*x instead of exp()*x + x
stinebuu Mar 24, 2020
f6610c4
clang format
stinebuu Mar 24, 2020
ca62e19
Minor clean-up
stinebuu Mar 24, 2020
a10a650
Change names and add comments
stinebuu Mar 25, 2020
36457d0
Move regula_falsi to libnestutil
stinebuu Mar 27, 2020
94fb70d
iaf_psc_exp_ps and iaf_psc_exp_lossless use general regula falsi
stinebuu Mar 27, 2020
88631d4
Only point to node
stinebuu Mar 27, 2020
86d954e
Write output based on neuronlist in test_iaf_ps_dc_accuracy
stinebuu Mar 31, 2020
2224404
Tidy up SLI code in accuracy tests.
heplesser Mar 31, 2020
1136331
Change to reference
stinebuu Apr 1, 2020
6720c6b
Update comment
stinebuu Apr 1, 2020
1be1ea6
Add const
stinebuu Apr 1, 2020
6422ddf
Removed unused InterpOrder
stinebuu Apr 3, 2020
af99df4
Update comment in regula_falsi.h
stinebuu Apr 3, 2020
5f795ad
Update docstring in iaf_psc_exp_ps.h
stinebuu Apr 3, 2020
2153af9
Update comments
stinebuu Apr 3, 2020
6f85294
Print correct units in tests
stinebuu Apr 3, 2020
0292ac7
Consistent computation of membrane potential
stinebuu Apr 3, 2020
6fbf245
Throw exception if regula falsi does not converge
stinebuu Apr 3, 2020
1db6129
Return root if Regula Falsi converge, throw NumericalInstability if not
stinebuu Apr 3, 2020
0c4c1aa
Removed references to bisectioning
stinebuu Apr 6, 2020
a2d159e
Set 'Dwith-mpi=OFF' and deleted dependencies
steffengraber Apr 23, 2020
9648501
resolved NEST 2 / 3 specifics
jasperalbers Apr 23, 2020
c079dbd
removed /iaf_psc_alpha_presc
jasperalbers Apr 23, 2020
522ff21
Merge pull request #1532 from jasperalbers/nest-2.20.1-backport-PR-#1481
stinebuu Apr 24, 2020
a1a1d7a
Fix issue when passing a negative value to operator+= and operator-=
hakonsbm Apr 6, 2020
593c8c7
Added and refined BlockVector operators
hakonsbm Apr 6, 2020
0b274ec
Improved and added additional C++ tests
hakonsbm Apr 6, 2020
94875bf
Using single header variant for Boost tests
hakonsbm Apr 6, 2020
f160577
Readded missing fi
hakonsbm Apr 6, 2020
29398a4
Replaced TODO with function definitions without implementations
hakonsbm Apr 14, 2020
111d40d
Improved C++ tests
hakonsbm Apr 14, 2020
468f42a
Removed C++ test from nest namespace
hakonsbm Apr 14, 2020
8949c14
Changed Travis Boost installation from move to forced copy and remove
hakonsbm Apr 14, 2020
a21fe44
handle libboost same as all other libraries
gtrensch Apr 20, 2020
fe24e44
constistent directory name for boost install directory
gtrensch Apr 20, 2020
d490f25
Merge pull request #1551 from jasperalbers/nest-2.20.1-backport-PR-#1502
hakonsbm Apr 24, 2020
b95ef50
Add missing initialiser in copy constructor.
heplesser Apr 29, 2020
d743255
Merge pull request #1572 from jasperalbers/nest-2.20.1-backport-PR-#1566
heplesser Apr 30, 2020
3be9ac2
Merge pull request #1472 from steffengraber/doc-final-check
terhorstd May 12, 2020
df8c0c5
same commit as 2890ca6a3cf125e0502b3e01744f5ad5e5a88a7f in PR #1442
suku248 Feb 25, 2020
3d28d3a
Apply suggestions from code review
suku248 Feb 27, 2020
6d56f0c
Remove friend declaration
suku248 Feb 27, 2020
bafb8fb
Remove extra thread barriers
suku248 Feb 27, 2020
54826f8
Move setters and getters of BoolIndicatorUInt64 to header file
suku248 Feb 27, 2020
681626c
Add documentation
suku248 Feb 27, 2020
fa84895
Merge branch 'nest-2.20.1-heisenbug-fix' of github.com:jasperalbers/n…
jasperalbers May 13, 2020
5f018a3
reordered references to old nest versions
terhorstd May 20, 2020
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reordered references to old nest versions 
as requested by reviewer
@terhorstd
terhorstd authored May 20, 2020
commit 5f018a34722f9e98647c6a2c2c90d3e0ae5e3971
9 changes: 5 additions & 4 deletions doc/download.rst
View file
Original file line number Diff line number Diff line change
@@ -33,6 +33,7 @@ Download NEST source code

.. _download_livemedia:


Download the NEST live media for virtual machines
--------------------------------------------------

@@ -44,9 +45,6 @@ After downloading the virtual machine, check out the :doc:`install instructions

`Checksum 2.20.1 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.20.1.ova.sha512sum>`_

* `NEST Live Media 2.20.0 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.20.0.ova>`_

`Checksum 2.20.0 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.20.0.ova.sha512sum>`_

Previous releases
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -56,6 +54,10 @@ thus, we encourage our users to use the **most recent version of NEST**.

**Older Versions of Live Media**

* `NEST Live Media 2.20.0 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.20.0.ova>`_

`Checksum 2.20.0 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.20.0.ova.sha512sum>`_

- `NEST Live Media 2.18.0 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.18.0.ova>`_

`Checksum 2.18.0 <https://nest-simulator.org/downloads/gplreleases/lubuntu-18.04_nest-2.18.0.ova.sha512sum>`_
@@ -72,7 +74,6 @@ thus, we encourage our users to use the **most recent version of NEST**.

`Checksum 2.12.0 <https://www.nest-simulator.org/downloads/gplreleases/lubuntu-16.04_nest-2.12.0.ova.sha512sum>`_


- `Download 2.10.0 <https://www.nest-simulator.org/downloads/gplreleases/lubuntu-16.04_nest-2.10.0.ova>`_
(OVA, ~3.7G)