Skip to content

Commit

Permalink
Merge branch 'migrate-docs'
Browse files Browse the repository at this point in the history
* migrate-docs:
  Update docs URLs
  fix docs links, remove narratives index page
  [fetch-docs] relative link -> absolute
  [fetch-docs] relative links
  [fetch-docs] relative links
  fix link to work when doc fetched by main rtd
  exclude unused docs from build
  [docs] minor fixes
  [docs] minor fixes and content improvements
  [docs] remove stub warning from splash page
  [docs] Set theme (sidebar) options
  docs link back to docs.nextstrain.org/en/latest;
  add link back to parent project
  remove non-reference material from docs
  readthedocs config must be in root of project
  docs build environment with deps
  Migrate Auspice docs from docusaurus to RTD
  • Loading branch information
jameshadfield committed Nov 12, 2020
2 parents f2b68a0 + 090c16c commit b3ae796
Show file tree
Hide file tree
Showing 145 changed files with 439 additions and 17,421 deletions.
4 changes: 1 addition & 3 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
---
title: Changelog
---
# Changelog

## version 2.19.0 - 2020/10/07
* The auspice client now makes a request for the root-sequence JSON, which allows colouring of the tree by genotypes where there are no mutations.
Expand Down
4 changes: 1 addition & 3 deletions DEV_DOCS.md
Original file line number Diff line number Diff line change
@@ -1,6 +1,4 @@
---
title: Contributing to Auspice development
---
# Contributing to Auspice development

Thank you for helping us to improve Nextstrain!

Expand Down
3 changes: 0 additions & 3 deletions docs-src/.gitignore

This file was deleted.

44 changes: 0 additions & 44 deletions docs-src/README.md

This file was deleted.

Binary file removed docs-src/docs/assets/auspice-vs-nextstrain.png
Binary file not shown.
69 changes: 0 additions & 69 deletions docs-src/docs/assets/authentication.svg

This file was deleted.

Binary file removed docs-src/docs/assets/csv-extra-data.png
Binary file not shown.
Binary file removed docs-src/docs/assets/mumps.png
Binary file not shown.
Binary file removed docs-src/docs/assets/narrative-tutorial-p1.png
Binary file not shown.
Binary file removed docs-src/docs/assets/narrative-tutorial-p2.png
Binary file not shown.
Binary file removed docs-src/docs/assets/splash.png
Binary file not shown.
Binary file removed docs-src/docs/assets/tangle.png
Binary file not shown.
Binary file removed docs-src/docs/assets/v2-base-colours.png
Binary file not shown.
Binary file removed docs-src/docs/assets/v2-entropy.gif
Binary file not shown.
Binary file removed docs-src/docs/assets/v2-pie-charts.gif
Binary file not shown.
Binary file removed docs-src/docs/assets/v2-pie-charts.png
Binary file not shown.
Binary file removed docs-src/docs/assets/v2-time-labels.png
Binary file not shown.
Binary file removed docs-src/docs/assets/v2-tree-info.png
Binary file not shown.
1 change: 0 additions & 1 deletion docs-src/docs/contributing/overview.md

This file was deleted.

25 changes: 0 additions & 25 deletions docs-src/docs/customise-client/introduction.md

This file was deleted.

32 changes: 0 additions & 32 deletions docs-src/docs/introduction/overview.md

This file was deleted.

1 change: 0 additions & 1 deletion docs-src/docs/releases/changelog.md

This file was deleted.

62 changes: 0 additions & 62 deletions docs-src/docs/server/introduction.md

This file was deleted.

5 changes: 0 additions & 5 deletions docs-src/docs/tutorial/how-to-read-a-phylogenetic-tree.md

This file was deleted.

5 changes: 0 additions & 5 deletions docs-src/docs/tutorial/interpreting-entropy.md

This file was deleted.

5 changes: 0 additions & 5 deletions docs-src/docs/tutorial/interpreting-frequencies.md

This file was deleted.

9 changes: 0 additions & 9 deletions docs-src/docs/tutorial/interpreting-the-map.md

This file was deleted.

31 changes: 0 additions & 31 deletions docs-src/docs/tutorial/overview.md

This file was deleted.

Loading

0 comments on commit b3ae796

Please sign in to comment.