Changed path to RDP and SILVA ref files

[chan-98]

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Fixing path from zenodo.org/record to zenodo.org/records to fix db staging error. Closes #834

[nf-core-bot]

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

[jasmezz]

Please resolve conflicts, assuming all tests succeed.

You updated because the record links do redirect anyway to records, right?

Edit: Ah I see the linked issue now. All clear ;)

[chan-98]

Please resolve conflicts, assuming all tests succeed.

Resolved merge conflicts.

[d4straub]

Hi there, thanks for the effort, but there seems to be some issue with the PR because Silva 138.2 database entry was removed.

[d4straub]

Looks good to me now.
However, 3 tests are failing that are supposed to not fail, because contents of a file are changing that lists also the link to the chosen database. Could you change that md5sums?
See 1, 2, 3

[chan-98]

@d4straub Ah, thanks! Sorry for not checking this before, I'm quite new to nf-core. I think this should work now?

Edit: I don't understand why the tests are not producing the desired output files, could use some help here.

[d4straub]

Looks good to me, thanks!

Edit: I don't understand why the tests are not producing the desired output files, could use some help here.

All CI tests are run with nextflow version 24.04.2 and the latest nf version. All tests with nf version 24.04.2 succeed, that is the required part. The latest nf version is however incompatible with the current nf-core template, when updating to th newest template that should be fixed.

Edit: do you want to do the honors and merge the PR?

[chan-98]

Thanks for the explanation!

Edit: do you want to do the honors and merge the PR?

Ha, I don't think I have the necessary permissions 😄 I see no Merge option