Updated software versions to 3.0.6

nf-core · May 13, 2024 · c215011 · c215011
1 parent f7b6e2d
commit c215011
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Showing 12 changed files with 15 additions and 15 deletions.
diff --git a/modules/local/decimate.nf b/modules/local/decimate.nf
@@ -13,7 +13,7 @@ process DECIMATE {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(template), path(archive)

diff --git a/modules/local/dm_rm_calc.nf b/modules/local/dm_rm_calc.nf
@@ -9,7 +9,7 @@ process DM_RM_CALC {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(ephemeris), path(template), path(raw_archive), path(cleaned_archive)

diff --git a/modules/local/generate_image_results.nf b/modules/local/generate_image_results.nf
@@ -14,7 +14,7 @@ process GENERATE_IMAGE_RESULTS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(ephemeris), path(template), path(raw_archive), path(cleaned_archive), path(dm_results), path(rm_fit_image)

diff --git a/modules/local/generate_residuals.nf b/modules/local/generate_residuals.nf
@@ -9,7 +9,7 @@ process GENERATE_RESIDUALS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(ephemeris)

diff --git a/modules/local/generate_toas.nf b/modules/local/generate_toas.nf
@@ -12,7 +12,7 @@ process GENERATE_TOAS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(ephemeris), path(template), path(decimated_archives)

diff --git a/modules/local/grab_all_pairs.nf b/modules/local/grab_all_pairs.nf
@@ -9,7 +9,7 @@ process GRAB_ALL_PAIRS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     val pulsar

diff --git a/modules/local/obs_list.nf b/modules/local/obs_list.nf
@@ -4,7 +4,7 @@ process OBS_LIST {
 
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     val pulsars

diff --git a/modules/local/psradd_calibrate_clean.nf b/modules/local/psradd_calibrate_clean.nf
@@ -12,7 +12,7 @@ process PSRADD_CALIBRATE_CLEAN {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(cal_loc), path(ephemeris), path(template)

diff --git a/modules/local/upload_dm_rm_results.nf b/modules/local/upload_dm_rm_results.nf
@@ -9,7 +9,7 @@ process UPLOAD_DM_RM_RESULTS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(results_json), path(png_files)

diff --git a/modules/local/upload_results.nf b/modules/local/upload_results.nf
@@ -9,7 +9,7 @@ process UPLOAD_RESULTS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(png_files), path(dat_files), path(dynspec_files), path(results_json)

diff --git a/modules/local/upload_toas.nf b/modules/local/upload_toas.nf
@@ -9,7 +9,7 @@ process UPLOAD_TOAS {
     // conda "YOUR-TOOL-HERE"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/meerpipe:latest':
-        'nickswainston/meerpipe:latest' }"
+        'nickswainston/meerpipe:3.0.6' }"
 
     input:
     tuple val(meta), path(ephemeris), path(template), path(toas)

diff --git a/nextflow.config b/nextflow.config
@@ -12,7 +12,7 @@ manifest {
     homePage = 'https://github.com/OZGrav/meerpipe'
     description = 'Pulsar timing data processing pipeline for MeerTime data.'
     mainScript = 'meerpipe.nf'
-    version = '3.0.4'
+    version = '3.0.6'
     author = 'Nick Swainston, Andrew Cameron, Aditya Parthasarathy, Stefan Oslowski, Andrew Jameson, Renée Spiewak, Daniel Reardon, Matthew Bailes'
     defaultBranch = 'main'
     doi = '10.5281/zenodo.7918680'
@@ -145,12 +145,12 @@ def mem_calc(factor, task_attempt, nchan, nbin, dur, ram_max) {
 }
 
 // Software versions
-psrdb_version = "5423d8b"
-meerpipe_version = "19aac84"
+psrdb_version = "3.0.6"
+meerpipe_version = "3.0.6"
 tempo2_version = "ce14d72_temponest_apar_56e2b58"
 tempo2_clock_version = "2021-04-26"
 psrchive_version = "4c0597b7b"
-meertime_ephemerides_and_templates_version = "27abb55"
+meertime_ephemerides_and_templates_version = "5f59114"
 
 
 // CLUSTER SPECFIC DEFAULTS