Fix chr name errors#102

Merged

LouisLeNezet merged 15 commits intonf-core:devfrom LouisLeNezet:checkchr

Jul 16, 2024

+550-165

Commits on Jul 12, 2024

Compute chr list from vcf not from whole file
LouisLeNezet
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Update all nf-core modules (nf-core#100 )

LouisLeNezet
and
LouisLeNezet
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Update getFileExtension
LouisLeNezet
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Fix checkFileIndex
LouisLeNezet
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Merge branch 'dev' into checkchr
LouisLeNezet
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Set ch_regions as intersect of contigs, add test and documentation
LouisLeNezet
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Add more comment
LouisLeNezet
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Add test for checkFileIndex
LouisLeNezet
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Commits on Jul 16, 2024

remove unused subworkflow (nf-core#105 )

atrigila
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LouisLeNezet
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Update data tests sets
LouisLeNezet
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Update Quilt sbwf, fix checkFileIndex, update snapshot
LouisLeNezet
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Update snapshot and function test
LouisLeNezet
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Add dog test
LouisLeNezet
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Update subworkflows/local/utils_nfcore_phaseimpute_pipeline/tests/function.nf.test

LouisLeNezet
and
atrigila
authored
Add more test to vcf_chr_rename
LouisLeNezet
committed