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Update modules and fix linting #51

Merged
merged 4 commits into from
May 13, 2024
Merged

Update modules and fix linting #51

merged 4 commits into from
May 13, 2024

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LouisLeNezet
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@LouisLeNezet LouisLeNezet commented May 13, 2024 •
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Update all process and fix linting of pipeline.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/phaseimpute branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@LouisLeNezet LouisLeNezet self-assigned this May 13, 2024
@LouisLeNezet LouisLeNezet added the enhancement New feature or request label May 13, 2024
@LouisLeNezet LouisLeNezet added this to the v0.99.0 milestone May 13, 2024
LouisLeNezet
LouisLeNezet commented May 13, 2024
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Ready

@LouisLeNezet LouisLeNezet requested a review from atrigila May 13, 2024 13:21
@LouisLeNezet LouisLeNezet merged commit 9b10d86 into nf-core:dev May 13, 2024
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@atrigila atrigila atrigila approved these changes

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@LouisLeNezet LouisLeNezet

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enhancement New feature or request
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v0.99.0
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@LouisLeNezet @atrigila