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Fix pipeline linting nf-core component behaviour #8732

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Fix pipeline linting nf-core component behaviour

Fix pipeline linting nf-core component behaviour #8732

Run time

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Job Run time
setup (3.8, ubuntu-latest)
1s
setup (3.12, ubuntu-latest)
1s
setup (3.8, ubuntu-20.04)
1s
Get test file matrix
3s
Run test_utils.py with Python 3.12 on ubuntu-latest
3m 4s
Run test_test_utils.py with Python 3.12 on ubuntu-latest
50s
Run modules/test_install.py with Python 3.12 on ubuntu-latest
3m 21s
Run modules/test_create.py with Python 3.12 on ubuntu-latest
2m 54s
Run modules/test_remove.py with Python 3.12 on ubuntu-latest
2m 7s
Run modules/test_lint.py with Python 3.12 on ubuntu-latest
9m 42s
Run modules/test_list.py with Python 3.12 on ubuntu-latest
3m 45s
Run modules/test_modules_utils.py with Python 3.12 on ubuntu-latest
1m 55s
Run modules/test_patch.py with Python 3.12 on ubuntu-latest
3m 21s
Run modules/test_info.py with Python 3.12 on ubuntu-latest
2m 14s
Run modules/test_update.py with Python 3.12 on ubuntu-latest
5m 58s
Run modules/test_modules_json.py with Python 3.12 on ubuntu-latest
4m 36s
Run modules/test_bump_versions.py with Python 3.12 on ubuntu-latest
2m 25s
Run test_subworkflows.py with Python 3.12 on ubuntu-latest
1m 0s
Run test_cli.py with Python 3.12 on ubuntu-latest
51s
Run components/test_components_generate_snapshot.py with Python 3.12 on ubuntu-latest
7m 31s
Run components/test_components_snapshot_test.py with Python 3.12 on ubuntu-latest
1m 9s
Run components/test_components_utils.py with Python 3.12 on ubuntu-latest
53s
Run test_modules.py with Python 3.12 on ubuntu-latest
1m 31s
Run test_pipelines.py with Python 3.12 on ubuntu-latest
46s
Run test_lint_utils.py with Python 3.12 on ubuntu-latest
1m 6s
Run pipelines/test_download.py with Python 3.12 on ubuntu-latest
1m 25s
Run pipelines/test_create_app.py with Python 3.12 on ubuntu-latest
2m 17s
Run pipelines/test_sync.py with Python 3.12 on ubuntu-latest
3m 17s
Run pipelines/test_create.py with Python 3.12 on ubuntu-latest
1m 21s
Run pipelines/test_params_file.py with Python 3.12 on ubuntu-latest
1m 22s
Run pipelines/test_rocrate.py with Python 3.12 on ubuntu-latest
1m 44s
Run pipelines/lint/test_nextflow_config.py with Python 3.12 on ubuntu-latest
2m 1s
Run pipelines/lint/test_version_consistency.py with Python 3.12 on ubuntu-latest
1m 3s
Run pipelines/lint/test_if_empty_null.py with Python 3.12 on ubuntu-latest
1m 15s
Run pipelines/lint/test_local_component_structure.py with Python 3.12 on ubuntu-latest
58s
Run pipelines/lint/test_actions_schema_validation.py with Python 3.12 on ubuntu-latest
1m 13s
Run pipelines/lint/test_configs.py with Python 3.12 on ubuntu-latest
1m 24s
Run pipelines/lint/test_actions_awstest.py with Python 3.12 on ubuntu-latest
1m 4s
Run pipelines/lint/test_actions_ci.py with Python 3.12 on ubuntu-latest
1m 8s
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.12 on ubuntu-latest
1m 12s
Run pipelines/lint/test_nfcore_yml.py with Python 3.12 on ubuntu-latest
1m 20s
Run pipelines/lint/test_modules_json.py with Python 3.12 on ubuntu-latest
1m 1s
Run pipelines/lint/test_plugin_includes.py with Python 3.12 on ubuntu-latest
1m 5s
Run pipelines/lint/test_merge_markers.py with Python 3.12 on ubuntu-latest
1m 12s
Run pipelines/lint/test_multiqc_config.py with Python 3.12 on ubuntu-latest
1m 33s
Run pipelines/lint/test_files_unchanged.py with Python 3.12 on ubuntu-latest
1m 19s
Run pipelines/lint/test_files_exist.py with Python 3.12 on ubuntu-latest
1m 34s
Run pipelines/lint/test_template_strings.py with Python 3.12 on ubuntu-latest
1m 13s
Run pipelines/test_lint.py with Python 3.12 on ubuntu-latest
1m 49s
Run pipelines/test_list.py with Python 3.12 on ubuntu-latest
53s
Run pipelines/test_launch.py with Python 3.12 on ubuntu-latest
3m 31s
Run pipelines/test_bump_version.py with Python 3.12 on ubuntu-latest
1m 17s
Run pipelines/test_create_logo.py with Python 3.12 on ubuntu-latest
1m 34s
Run pipelines/test_refgenie.py with Python 3.12 on ubuntu-latest
1m 10s
Run pipelines/test_schema.py with Python 3.12 on ubuntu-latest
3m 36s
Run subworkflows/test_install.py with Python 3.12 on ubuntu-latest
3m 56s
Run subworkflows/test_create.py with Python 3.12 on ubuntu-latest
1m 49s
Run subworkflows/test_remove.py with Python 3.12 on ubuntu-latest
2m 36s
Run subworkflows/test_lint.py with Python 3.12 on ubuntu-latest
5m 54s
Run subworkflows/test_list.py with Python 3.12 on ubuntu-latest
1m 51s
Run subworkflows/test_patch.py with Python 3.12 on ubuntu-latest
2m 44s
Run subworkflows/test_info.py with Python 3.12 on ubuntu-latest
2m 5s
Run subworkflows/test_update.py with Python 3.12 on ubuntu-latest
9m 28s
Run test_components.py with Python 3.12 on ubuntu-latest
59s
coverage
1m 0s
2h 20m 18s