Harvard Medical School - Department of Biomedical Informatics

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367 repositories

vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks gehlenborglab zarr viv imjoy
TypeScript
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MIT License
•18•138•18•11•Updated Mar 6, 2025Mar 6, 2025
i2b2v2-webclient
Public
JavaScript
•4•2•1•2•Updated Mar 6, 2025Mar 6, 2025
ETLToolSuite-EntityGenerator
Public
This tool will generate Entity Files that can be used to load into Datasources.
Java
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Apache License 2.0
•1•0•0•0•Updated Mar 5, 2025Mar 5, 2025
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
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Apache License 2.0
•0•1•0•11•Updated Mar 5, 2025Mar 5, 2025
gehlenborglab-website
Public
Code for Gehlenborg Lab website.
website gehlenborglab hidivelab
TypeScript
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MIT License
•39•9•13•1•Updated Mar 5, 2025Mar 5, 2025
pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Mar 4, 2025Mar 4, 2025
pic-sure-hpds
Public
Java
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Apache License 2.0
•6•3•0•9•Updated Mar 4, 2025Mar 4, 2025
udi-grammar
Public
The Universal Discovery Interface Grammar.
TypeScript
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MIT License
•0•2•0•2•Updated Mar 4, 2025Mar 4, 2025
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap viv
JavaScript
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MIT License
•47•298•47•8•Updated Mar 4, 2025Mar 4, 2025
pic-sure-services
Public
Java
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Apache License 2.0
•0•0•0•2•Updated Mar 4, 2025Mar 4, 2025
pic-sure-gic-institution-frontend
Public
JavaScript
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Apache License 2.0
•0•1•0•1•Updated Mar 4, 2025Mar 4, 2025
pic-sure-gic-institution-release-control
Public
Apache License 2.0
•0•0•0•0•Updated Mar 4, 2025Mar 4, 2025
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
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Apache License 2.0
•0•1•0•1•Updated Mar 4, 2025Mar 4, 2025
pic-sure-metadata-curation
Public
Parse and generate variable-level data to be exposed through the search interface.
SAS
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Apache License 2.0
•2•2•0•0•Updated Mar 4, 2025Mar 4, 2025
picsure-dictionary-etl
Public
Java
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Apache License 2.0
•0•0•0•0•Updated Mar 3, 2025Mar 3, 2025
pic-sure-bdc-infrastructure
Public
HCL
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Apache License 2.0
•1•5•0•3•Updated Mar 3, 2025Mar 3, 2025
hypatio-app
Public
Python
•0•4•0•9•Updated Mar 3, 2025Mar 3, 2025
dbmi-fileservice
Public
Python
•0•2•0•4•Updated Mar 3, 2025Mar 3, 2025
fhirquestionnaire
Public
HTML
•0•2•0•4•Updated Mar 3, 2025Mar 3, 2025
dbmisvc-starter
Public
Python
•0•1•0•3•Updated Mar 3, 2025Mar 3, 2025
actions
Public
0•0•0•48•Updated Mar 3, 2025Mar 3, 2025
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
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Apache License 2.0
•0•0•0•0•Updated Mar 1, 2025Mar 1, 2025
avillachlab-jenkins-bdc-etl
Public
Shell
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Apache License 2.0
•0•0•0•0•Updated Feb 26, 2025Feb 26, 2025
pic-sure-all-in-one
Public
Shell
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Apache License 2.0
•12•4•0•1•Updated Feb 26, 2025Feb 26, 2025
Access-to-Data-using-PIC-SURE-API
Public
Jupyter Notebook
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Apache License 2.0
•8•6•0•0•Updated Feb 26, 2025Feb 26, 2025
dbmisvc-test
Public
Python
•0•0•0•0•Updated Feb 24, 2025Feb 24, 2025
service-workbench-automation-security-scripts
Public
Python
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Apache License 2.0
•1•0•0•1•Updated Feb 21, 2025Feb 21, 2025
CHIEF
Public
Clinical Histopathology Imaging Evaluation Foundation Model
Python
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GNU Affero General Public License v3.0
•92•582•32•10•Updated Feb 20, 2025Feb 20, 2025
udi-prototype
Public
For saving prototyping / brainstorming / exploring code for the UDI project.
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Feb 19, 2025Feb 19, 2025
udi-chat
Public
For experimenting with chat based interface for the Universal Discovery Interface.
TypeScript
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MIT License
•0•0•0•1•Updated Feb 19, 2025Feb 19, 2025