nf-core
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test-datasets
Public- Config files used to define parameters specific to compute environments at different Institutions
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
- Generation and update of protein families
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
magmap
Publicclipseq
Public- Pipeline for testing drug response prediction models in a statistically and biologically sound way.
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
createtaxdb
PublicParallelised and automated construction of metagenomic classifier databases of different toolsmolkart
PublicA pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)- A fully reproducible and state-of-the-art ancient DNA analysis pipeline
tfactivity
PublicBioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.pacvar
PublicLongread PacBio sequencing processing for WGS and PureTargettools
Public