Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chore(deps): update dependency snakemake to v8.30.0 #4924

Merged
merged 1 commit into from
Mar 11, 2025

Conversation

renovate[bot]
Copy link
Contributor

@renovate renovate bot commented Mar 11, 2025

This PR contains the following updates:

Package Change Age Adoption Passing Confidence
snakemake 8.29.0 -> 8.30.0 age adoption passing confidence

Warning

Some dependencies could not be looked up. Check the Dependency Dashboard for more information.


Release Notes

snakemake/snakemake (snakemake)

v8.30.0

Compare Source

Features
  • Add extra input size properties (#​2424) (359ae2e)
  • shell function calls inside of the 'run' directive now use conda, container, or envmodules specifications (#​2289) (0193e34)
  • xonsh support for script directive (#​3310) (d1c369b)
Bug Fixes
Documentation

v8.29.3

Compare Source

Bug Fixes
Documentation

v8.29.2

Compare Source

Documentation
  • define gpu and gpu_manufacturer standard resource (f4e7a08)
  • define gpu_model resource (ac7d704)

v8.29.1

Compare Source

Bug Fixes

Configuration

📅 Schedule: Branch creation - "* 0-3 * * *" (UTC), Automerge - At any time (no schedule defined).

🚦 Automerge: Disabled by config. Please merge this manually once you are satisfied.

Rebasing: Whenever PR becomes conflicted, or you tick the rebase/retry checkbox.

🔕 Ignore: Close this PR and you won't be reminded about this update again.


  • If you want to rebase/retry this PR, check this box

This PR was generated by Mend Renovate. View the repository job log.

@renovate renovate bot requested a review from nvuillam as a code owner March 11, 2025 16:32
@renovate renovate bot added the dependencies Pull requests that update a dependency file label Mar 11, 2025
Copy link
Contributor

github-actions bot commented Mar 11, 2025

🦙 MegaLinter status: ⚠️ WARNING

Descriptor Linter Files Fixed Errors Warnings Elapsed time
✅ API spectral 1 0 0 1.61s
⚠️ BASH bash-exec 6 1 0 0.02s
✅ BASH shellcheck 6 0 0 0.18s
✅ BASH shfmt 6 0 0 0 0.69s
✅ COPYPASTE jscpd yes no no 2.81s
✅ DOCKERFILE hadolint 129 0 0 28.71s
✅ JSON jsonlint 20 0 0 0.19s
✅ JSON v8r 22 0 0 14.45s
⚠️ MARKDOWN markdownlint 267 0 302 0 22.42s
✅ MARKDOWN markdown-table-formatter 267 0 0 0 167.91s
⚠️ PYTHON bandit 215 66 0 3.84s
✅ PYTHON black 215 0 0 0 4.65s
✅ PYTHON flake8 215 0 0 2.04s
✅ PYTHON isort 215 0 0 0 1.05s
✅ PYTHON mypy 215 0 0 11.88s
✅ PYTHON pylint 215 0 0 33.21s
✅ PYTHON ruff 215 0 0 0 0.8s
✅ REPOSITORY checkov yes no no 37.21s
✅ REPOSITORY git_diff yes no no 0.65s
⚠️ REPOSITORY grype yes 28 no 24.57s
✅ REPOSITORY secretlint yes no no 8.66s
✅ REPOSITORY trivy yes no no 16.83s
✅ REPOSITORY trivy-sbom yes no no 0.63s
⚠️ REPOSITORY trufflehog yes 1 no 56.88s
✅ SPELL cspell 718 0 0 12.96s
⚠️ SPELL lychee 349 29 0 15.08s
✅ XML xmllint 3 0 0 0 0.82s
✅ YAML prettier 160 0 0 0 3.58s
✅ YAML v8r 102 0 0 19.21s
✅ YAML yamllint 161 0 0 2.97s

See detailed report in MegaLinter reports

MegaLinter is graciously provided by OX Security

@echoix echoix merged commit 487e095 into main Mar 11, 2025
130 checks passed
@echoix echoix deleted the renovate/snakemake-8.x branch March 11, 2025 21:30
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
dependencies Pull requests that update a dependency file
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant