Issue/35

CHANGELOG.md

@@ -3,6 +3,14 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+
+
+## v0.2.2 - [2024-08-01]
+
+### `Fixed`
+
+- Removed suffix from created databases, this resolves an issue where databases are not found as the wrong suffix is passed to the database option [PR 36](https://github.com/phac-nml/locidex/pull/36)
+
 ## v0.2.1 - [2024-07-29]
 
 ### `Fixed`

locidex/build.py

@@ -55,11 +55,12 @@ def __init__(self, input_file: os.PathLike, outdir: os.PathLike, config: DBConfi
                     blast_method = DBData.protein_db_type()
                 self.init_dir(outfile)
                 out_fasta = outfile.joinpath("{}.fasta".format(t))
+                output_db_path = outfile.joinpath(t)
                 self.write_seq_file(out_fasta, col_name)
                 creating_db = BlastMakeDB(input_file=out_fasta, 
                                         db_type=blast_method,
                                         parse_seqids=self.parse_seqids,
-                                        output_db_path=out_fasta)
+                                        output_db_path=output_db_path)
                 creating_db.makeblastdb()
         self.config.is_nucl = self.is_dna
         self.config.is_prot = self.is_protein

locidex/report.py

@@ -254,7 +254,7 @@ def allele_assignment(self,dbtype):
 
         hit_loci_names = self.get_hit_locinames()
         loci_lookup = self.get_loci_to_query_map(hit_loci_names,dbtype)
-
+        print("loci names", hit_loci_names)
 
         for locus in loci_lookup:
             loci_lookup[locus] = list(set(loci_lookup[locus]) - self.failed_seqids)

locidex/version.py

@@ -1 +1 @@
-__version__ = '0.2.1'
+__version__ = '0.2.2'