Fix minor documentation formatting issues in dancing links #34567
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Author: Martin Pépin |
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Reviewer: Frédéric Chapoton |
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comment:3
ok, feu vert |
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Changed branch from u/MartinPepin/dancing_links_docs_formatting to |
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Changed commit from |
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comment:5
Is it normal that |
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comment:6
hmm, no. But this is the last commit that Volker has closed before the release. |
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comment:7
These files are not modified on By the way, what's the usual practice regarding merged branches? Can I remove the branch on trac or is there a policy to keep them? |
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gh-35141: Revise the PR template <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> ### 📚 Description Made small edits to the PR template, making it concise and tidy overall. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on Depends on #12345: short description why this is a dependency Depends on #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35141 Reported by: Kwankyu Lee Reviewer(s): Kwankyu Lee, Tobias Diez
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gh-35355: partial fix for E221 (to be continued) <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description Partial fix for pycodestyle E221, done using autopep8. E221 multiple spaces before operator <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35355 Reported by: Frédéric Chapoton Reviewer(s): Matthias Köppe
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gh-35356: Fix documentation deployment <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description The update #35184 broke the docs upload. Hopefully this is fixed with this PR. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35356 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee
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gh-35366: Many more namespace packages – follow up <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> Follow-up from #35322. <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [ ] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35366 Reported by: Matthias Köppe Reviewer(s): Gonzalo Tornaría
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gh-35372: Replace more `.all` imports <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description This is a follow-up on: - #35110 As preparation for #35322, which is changing more packages to implicit namespace packages, we remove `.all` imports from these packages throughout the Sage library. This is part of: - #29705 <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> - Depends on #35418 - Depends on #35358 <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35372 Reported by: Matthias Köppe Reviewer(s): Gonzalo Tornaría
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gh-35377: build/pkgs/openblas/spkg-configure.m4: Reject version 0.3.22 <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description openblas 0.3.22 is broken, see: - #35371 - scipy/scipy#18208 - OpenMathLib/OpenBLAS#3976 We reject it. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35377 Reported by: Matthias Köppe Reviewer(s): John H. Palmieri
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gh-35382: Add missing backticks to correct formatting <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> `matrix_modn_dense_float.pyx` had single backticks in one of the docstrings which was causing it to render as LaTeX text, while it was intended to be monospace formatted. The missing backticks are added to fix this. Fixes #35363 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [x] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35382 Reported by: Karan Handa Reviewer(s): Matthias Köppe
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gh-35384: `make dist`: Update git remotes <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> The source tarballs made by `make dist` contain a git repository. We update the remotes. <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> As discussed in https://groups.google.com/g/sage-devel/c/TsHnvmkdrR8 <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35384 Reported by: Matthias Köppe Reviewer(s): John H. Palmieri
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gh-35385: src/tox.ini: Add cython-lint <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> Adding the command `sage --tox -e cython-lint`. See https://pypi.org/project/cython-lint/ There are many failures, so it is not run by default. <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [x] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35385 Reported by: Matthias Köppe Reviewer(s): Frédéric Chapoton
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gh-35390: Typo: 'minumum' for 'minimum' In sage/src/sage/libs/eclib/mwrank.pyx Line 843 should read 'minumum' instead of 'minimum'. <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35390 Reported by: yukibl Reviewer(s): Matthias Köppe
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gh-35405: accept plain Python types in block_matrix() <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35405 Reported by: Marc Mezzarobba Reviewer(s): Matthias Köppe
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gh-35409: fix pep8 E303 in folders starting with m <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description fix all pep8 E303 warning in the folders whose name starts with the letter m purely done with autopep8: ``` $ autopep8 -i --select=E303 src/sage/m*/*.py $ autopep8 -i --select=E303 src/sage/m*/*/*.py ``` <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35409 Reported by: Frédéric Chapoton Reviewer(s): David Coudert
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gh-35412: Activate codecov reports even if other checks are failing <!-- Please provide a concise, informative and self-explanatory title. --> <!-- Don't put issue numbers in the title. Put it in the Description below. --> <!-- For example, instead of "Fixes #12345", use "Add a new method to multiply two integers" --> ### 📚 Description Follow-up from #35056. Currently no codecov reports are displayed because the doc deployment workflow is failing and codecov by default only adds its checks if all other checks are passing. We change this setting so that codecov checks are always added, regardless of other failing tests. <!-- Describe your changes here in detail. --> <!-- Why is this change required? What problem does it solve? --> <!-- If this PR resolves an open issue, please link to it here. For example "Fixes #12345". --> <!-- If your change requires a documentation PR, please link it appropriately. --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. It should be `[x]` not `[x ]`. --> - [x] The title is concise, informative, and self-explanatory. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation accordingly. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on - #12345: short description why this is a dependency - #34567: ... --> <!-- If you're unsure about any of these, don't hesitate to ask. We're here to help! --> URL: #35412 Reported by: Tobias Diez Reviewer(s): Kwankyu Lee, Matthias Köppe, Tobias Diez
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<!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Many of the CI runs after a new release are failing, for months now, see eg https://github.com/sagemath/sage/actions/runs/12979684199/job/3621812 6145. Some of these failures are genuine (eg a certain package cannot be built on a certain system) and some others are due to constraints of the build system (eg running out of free space). Since there is very little point in senselessly burning energy, all runs that were failing for the last releases are disabled. Once the underlying issues are fixed, they can be easily be re-enabled. Moreover, the "minimal" runs where only a couple of systems packages are installed and most are build using sage are removed, keeping only the "standard" where all available system packages (corresponding to standard sage packages) are installed. New test run: https://github.com/tobiasdiez/sage/actions/runs/1319937223 2/job/36847711005 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies - sagemath#39251 (to resolve merge conflicts) <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39467 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee, Tobias Diez, user202729
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sagemathgh-39269: add parameter immutable to generators in `sage/graphs/digraph_generators.py` (part 3) Following sagemath#39264 and sagemath#39266, we add parameter immutable to the remaining digraph generators. This PR is motivated by discussions in sagemath#39177. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39269 Reported by: David Coudert Reviewer(s): David Coudert, Frédéric Chapoton
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sagemathgh-39467: Disable broken and outdated CI <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Many of the CI runs after a new release are failing, for months now, see eg https://github.com/sagemath/sage/actions/runs/12979684199/job/3621812 6145. Some of these failures are genuine (eg a certain package cannot be built on a certain system) and some others are due to constraints of the build system (eg running out of free space). Since there is very little point in senselessly burning energy, all runs that were failing for the last releases are disabled. Once the underlying issues are fixed, they can be easily be re-enabled. Moreover, the "minimal" runs where only a couple of systems packages are installed and most are build using sage are removed, keeping only the "standard" where all available system packages (corresponding to standard sage packages) are installed. New test run: https://github.com/tobiasdiez/sage/actions/runs/1319937223 2/job/36847711005 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies - sagemath#39251 (to resolve merge conflicts) <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39467 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee, Tobias Diez, user202729
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sagemathgh-38455: unitary DFT for symmetric group algebra <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies - sagemath#39200: Uses the decomposition. <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38455 Reported by: Jackson Walters Reviewer(s): Jackson Walters, Travis Scrimshaw
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sagemathgh-39102: Show continuation lines when doctest crashes I think this makes more sense. Normally the format is like ``` sage: code(code) ## line 1234 ## 'result' ``` or ``` sage: code(code) code(code) ## line 1234 ## 'result' ``` with the patch, the display becomes ``` sage: code(code) ....: code(code) ## line 1234 ## 'result' ``` ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39102 Reported by: user202729 Reviewer(s): Julian Rüth
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sagemathgh-39256: Add check for zero monomial in monomial_coefficient Fixes sagemath#39255 Added check for zero monomial and corresponding test case. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39256 Reported by: Vladimir Reviewer(s): Travis Scrimshaw
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sagemathgh-39269: add parameter immutable to generators in `sage/graphs/digraph_generators.py` (part 3) Following sagemath#39264 and sagemath#39266, we add parameter immutable to the remaining digraph generators. This PR is motivated by discussions in sagemath#39177. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39269 Reported by: David Coudert Reviewer(s): David Coudert, Frédéric Chapoton
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sagemathgh-39286: Migrate pyright workflow to use conda <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Simplifies the setup a bit and one step closer to independence on sage- the-distro. Also updates the pyright action ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39286 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik
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sagemathgh-39287: add parameter `immutable` to transitive closure methods in `sage/graphs/generic_graph.py` Following sagemath#39280 and discussions in sagemath#39177, we add parameter `immutable` to methods related to transitive closure in `sage/graphs/generic_graph.py` and `sage/graphs/generic_graph_pyx.pyx`: - `transitive_closure`. We also fix the use of parameter `loops` that was previously ignored - `transitive_reduction` - `transitive_reduction_acyclic` - `is_transitively_reduced`. Here we ensure that the method accepts immutable digraphs. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39287 Reported by: David Coudert Reviewer(s): Frédéric Chapoton
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sagemathgh-39467: Disable broken and outdated CI <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Many of the CI runs after a new release are failing, for months now, see eg https://github.com/sagemath/sage/actions/runs/12979684199/job/3621812 6145. Some of these failures are genuine (eg a certain package cannot be built on a certain system) and some others are due to constraints of the build system (eg running out of free space). Since there is very little point in senselessly burning energy, all runs that were failing for the last releases are disabled. Once the underlying issues are fixed, they can be easily be re-enabled. Moreover, the "minimal" runs where only a couple of systems packages are installed and most are build using sage are removed, keeping only the "standard" where all available system packages (corresponding to standard sage packages) are installed. New test run: https://github.com/tobiasdiez/sage/actions/runs/1319937223 2/job/36847711005 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies - sagemath#39251 (to resolve merge conflicts) <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39467 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee, Tobias Diez, user202729
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sagemathgh-39562: Meson: Remove unused build dependencies ppl and fplll <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Remove ppl and fplll as (build) dependencies according to sagemath#39548 (comment) since they are only used via their python wrappers. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39562 Reported by: Tobias Diez Reviewer(s): Gonzalo Tornaría, Michael Orlitzky
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sagemathgh-39571: Bump pillow and cffi This bumps pillow and cffi to the latest versions. I had trouble building older ones on macOS M1 machine ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39571 Reported by: Dima Pasechnik Reviewer(s): David Coudert, Kwankyu Lee
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sagemathgh-39593: remove traces of experimental package `modular_decomposition` The experimental package `modular_decomposition` has been removed years ago. The upstream source code was buggy. This PR removes forget traces in `build/pkgs/modular_decomposition`. After running `./bootstrap`, I don't see anymore traces of `modular_decomposition` in the options listed by `configure --help`. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39593 Reported by: David Coudert Reviewer(s): Frédéric Chapoton
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sagemathgh-39621: Fix documentation diff for cython() As discussed in sagemath#38946 (comment) , this hides an irrelevant entry in documentation diff. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39621 Reported by: user202729 Reviewer(s): Travis Scrimshaw
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sagemathgh-39623: Fix spacing for documentation Partially discussed in sagemath#39555. Meanwhile I find a few more. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39623 Reported by: user202729 Reviewer(s): Frédéric Chapoton
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sagemathgh-39632: Implement matrix Schubert variety ideals <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> We provide an implementation that returns the defining ideal of the matrix Schubert variety corresponding to the permutation `w` using the Fulton generators for the ideal. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39632 Reported by: Travis Scrimshaw Reviewer(s): Frédéric Chapoton, Travis Scrimshaw
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sagemathgh-38455: unitary DFT for symmetric group algebra <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies - sagemath#39200: Uses the decomposition. <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#38455 Reported by: Jackson Walters Reviewer(s): Jackson Walters, Travis Scrimshaw
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sagemathgh-39102: Show continuation lines when doctest crashes I think this makes more sense. Normally the format is like ``` sage: code(code) ## line 1234 ## 'result' ``` or ``` sage: code(code) code(code) ## line 1234 ## 'result' ``` with the patch, the display becomes ``` sage: code(code) ....: code(code) ## line 1234 ## 'result' ``` ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39102 Reported by: user202729 Reviewer(s): Julian Rüth
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sagemathgh-39256: Add check for zero monomial in monomial_coefficient Fixes sagemath#39255 Added check for zero monomial and corresponding test case. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39256 Reported by: Vladimir Reviewer(s): Travis Scrimshaw
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sagemathgh-39269: add parameter immutable to generators in `sage/graphs/digraph_generators.py` (part 3) Following sagemath#39264 and sagemath#39266, we add parameter immutable to the remaining digraph generators. This PR is motivated by discussions in sagemath#39177. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39269 Reported by: David Coudert Reviewer(s): David Coudert, Frédéric Chapoton
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sagemathgh-39286: Migrate pyright workflow to use conda <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Simplifies the setup a bit and one step closer to independence on sage- the-distro. Also updates the pyright action ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39286 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik
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sagemathgh-39287: add parameter `immutable` to transitive closure methods in `sage/graphs/generic_graph.py` Following sagemath#39280 and discussions in sagemath#39177, we add parameter `immutable` to methods related to transitive closure in `sage/graphs/generic_graph.py` and `sage/graphs/generic_graph_pyx.pyx`: - `transitive_closure`. We also fix the use of parameter `loops` that was previously ignored - `transitive_reduction` - `transitive_reduction_acyclic` - `is_transitively_reduced`. Here we ensure that the method accepts immutable digraphs. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39287 Reported by: David Coudert Reviewer(s): Frédéric Chapoton
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sagemathgh-39467: Disable broken and outdated CI <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Many of the CI runs after a new release are failing, for months now, see eg https://github.com/sagemath/sage/actions/runs/12979684199/job/3621812 6145. Some of these failures are genuine (eg a certain package cannot be built on a certain system) and some others are due to constraints of the build system (eg running out of free space). Since there is very little point in senselessly burning energy, all runs that were failing for the last releases are disabled. Once the underlying issues are fixed, they can be easily be re-enabled. Moreover, the "minimal" runs where only a couple of systems packages are installed and most are build using sage are removed, keeping only the "standard" where all available system packages (corresponding to standard sage packages) are installed. New test run: https://github.com/tobiasdiez/sage/actions/runs/1319937223 2/job/36847711005 ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies - sagemath#39251 (to resolve merge conflicts) <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39467 Reported by: Tobias Diez Reviewer(s): Dima Pasechnik, Kwankyu Lee, Tobias Diez, user202729
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sagemathgh-39562: Meson: Remove unused build dependencies ppl and fplll <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> Remove ppl and fplll as (build) dependencies according to sagemath#39548 (comment) since they are only used via their python wrappers. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [ ] The title is concise and informative. - [ ] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39562 Reported by: Tobias Diez Reviewer(s): Gonzalo Tornaría, Michael Orlitzky
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sagemathgh-39571: Bump pillow and cffi This bumps pillow and cffi to the latest versions. I had trouble building older ones on macOS M1 machine ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39571 Reported by: Dima Pasechnik Reviewer(s): David Coudert, Kwankyu Lee
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sagemathgh-39593: remove traces of experimental package `modular_decomposition` The experimental package `modular_decomposition` has been removed years ago. The upstream source code was buggy. This PR removes forget traces in `build/pkgs/modular_decomposition`. After running `./bootstrap`, I don't see anymore traces of `modular_decomposition` in the options listed by `configure --help`. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [ ] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39593 Reported by: David Coudert Reviewer(s): Frédéric Chapoton
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sagemathgh-39602: bump executing to 2.2.0 It's in particular needed to fix ipython error handling with Python 3.13 This will fix sagemath#39591 see sagemath#39591 (comment) by Tobias Diez ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39602 Reported by: Dima Pasechnik Reviewer(s):
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sagemathgh-39621: Fix documentation diff for cython() As discussed in sagemath#38946 (comment) , this hides an irrelevant entry in documentation diff. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39621 Reported by: user202729 Reviewer(s): Travis Scrimshaw
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sagemathgh-39623: Fix spacing for documentation Partially discussed in sagemath#39555. Meanwhile I find a few more. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [ ] I have created tests covering the changes. - [ ] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39623 Reported by: user202729 Reviewer(s): Frédéric Chapoton
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sagemathgh-39632: Implement matrix Schubert variety ideals <!-- ^ Please provide a concise and informative title. --> <!-- ^ Don't put issue numbers in the title, do this in the PR description below. --> <!-- ^ For example, instead of "Fixes sagemath#12345" use "Introduce new method to calculate 1 + 2". --> <!-- v Describe your changes below in detail. --> <!-- v Why is this change required? What problem does it solve? --> <!-- v If this PR resolves an open issue, please link to it here. For example, "Fixes sagemath#12345". --> We provide an implementation that returns the defining ideal of the matrix Schubert variety corresponding to the permutation `w` using the Fulton generators for the ideal. ### 📝 Checklist <!-- Put an `x` in all the boxes that apply. --> - [x] The title is concise and informative. - [x] The description explains in detail what this PR is about. - [x] I have linked a relevant issue or discussion. - [x] I have created tests covering the changes. - [x] I have updated the documentation and checked the documentation preview. ### ⌛ Dependencies <!-- List all open PRs that this PR logically depends on. For example, --> <!-- - sagemath#12345: short description why this is a dependency --> <!-- - sagemath#34567: ... --> URL: sagemath#39632 Reported by: Travis Scrimshaw Reviewer(s): Frédéric Chapoton, Travis Scrimshaw
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Component: documentation
Author: Martin Pépin
Branch:
1c9e627Reviewer: Frédéric Chapoton
Issue created by migration from https://trac.sagemath.org/ticket/34567
The text was updated successfully, but these errors were encountered: