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feat: resolve dataset names to urls if in params dict #210

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@ejseqera ejseqera commented Mar 4, 2025

This PR adds support for resolving dataset references in pipeline parameters. Users can now reference a dataset by name in their pipeline parameters, and seqerakit will automatically resolve it to the dataset URL.

  • Added resolve_dataset_reference function to handle dataset URL resolution
  • Created process_params_dict to standardize params handling across commands
  • Added error handling for missing datasets and resolution failures and tests

@ejseqera ejseqera requested a review from adamrtalbot March 11, 2025 00:22
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