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38 Open 216 Closed
38 Open 216 Closed
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Issues list

visualize knot on the object derived from monocle2
#270 opened Feb 11, 2025 by yxiao832
earlyDETest() does not return Log fold changes even if pairwise is TRUE
#269 opened Jan 21, 2025 by gabrielnegreira
1
plotGeneCount using only one lineage
#268 opened Dec 16, 2024 by Yanst86
2
earlyDEtest interpretation
#267 opened Oct 17, 2024 by ishars00
2
Problem with coloring dots using pointCol in plotSmoothers
#266 opened Oct 1, 2024 by beazors
1
Combining multiple gams together
#265 opened Sep 26, 2024 by rayajallad
1
Interpreting earlyDE test when # of knots is not equal among lineages
#264 opened Aug 30, 2024 by beazors
3
Extracting middle knot dots when using embedCurves from slingshot
#263 opened Aug 5, 2024 by kmh005
AIC charts give incorrect relative AIC value
#262 opened Jul 31, 2024 by beazors
1
Using BatchtoolsParam() in fitGAM()
#261 opened Jul 4, 2024 by Alexis-Varin
DEG from tradeseq
#260 opened May 30, 2024 by synatkeamsk
1
figGAM is not adhering to BPPARAM limits.
#259 opened May 24, 2024 by dfermin
1
BPPARAM with fitGAM
#258 opened Apr 22, 2024 by AndreaYCT
8
How to compare Seurat Log2FC with TradeSeq Log2FC
#256 opened Mar 7, 2024 by No2Ross
predictSmooth is calculating super high values for lowly expressed genes
#252 opened Feb 13, 2024 by yashuap
5
Association of gene expression with pseudotime
#249 opened Jan 24, 2024 by A-legac45
10
Monocle3 as input to tradeSeq
#247 opened Jan 5, 2024 by jiangzh-coder
3
query about conditionTest significant genes
#237 opened Jun 21, 2023 by EH0234
6
access to the line in plotsmoothers
#235 opened May 24, 2023 by nouhaylaeraysy
Add an extra column in the output of conditionTest() with log2fc results
#234 opened May 23, 2023 by gabrielnegreira
3
Discrepancy between plotSmoothers and predictSmooth
#232 opened Apr 5, 2023 by nickhir
5
Identifying knots on multi-curve plot
#226 opened Jan 24, 2023 by fluentin44
5
associationTest is renaming Lineages instead of reusing them
#224 opened Dec 20, 2022 by ccasar
Reducing dataset size to improve run time
#223 opened Dec 2, 2022 by fluentin44
4
Adapting to cytometry data?
#221 opened Nov 7, 2022 by 83years
1
ProTip! What’s not been updated in a month: updated:<2025-02-10.