Automated build

.github/workflows/ci.yaml

@@ -0,0 +1,80 @@
+# Continuous integration
+name: CI
+
+# Run in master and dev branches and in all pull requests to those branches
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  # Build and test the code
+  build:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+
+      # Caches NPM dependencies, as long as the package-lock.json is not modified
+      - uses: actions/cache@v2
+        with:
+          path: ~/.npm
+          key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
+          restore-keys: |
+            ${{ runner.os }}-node-
+
+      - name: Use Node.js 12
+        uses: actions/setup-node@v1
+        with:
+          node-version: 12
+
+      - name: Build code
+        run: npm run build
+
+  # Check that the docker image builds correctly
+  # Push to ohdsi/atlas:master for commits on master.
+  docker:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+
+      # Add Docker labels and tags
+      - name: Docker meta
+        id: docker_meta
+        uses: crazy-max/ghaction-docker-meta@v1
+        with:
+          images: ohdsi/atlas
+
+      # Setup docker build environment
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v1
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+
+      - name: Login to DockerHub
+        uses: docker/login-action@v1
+        with:
+          username: ${{ secrets.DOCKER_HUB_USERNAME }}
+          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
+
+      - name: Build and push
+        id: docker_build
+        uses: docker/build-push-action@v2
+        with:
+          context: ./
+          file: ./Dockerfile
+          push: ${{ github.event_name != 'pull_request' }}  # Push the master branch only
+          tags: ${{ steps.docker_meta.outputs.tags }}
+          # Use runtime labels from docker_meta as well as fixed labels
+          labels: |
+            ${{ steps.docker_meta.outputs.labels }}
+            org.opencontainers.image.authors="Joris Borgdorff <[email protected]>, Lee Evans - www.ltscomputingllc.com"
+            org.opencontainers.image.vendor="OHDSI"

.github/workflows/release.yaml

@@ -0,0 +1,104 @@
+# Create release files
+name: Release
+
+on:
+  release:
+    types: [published]
+
+jobs:
+
+  upload:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
+      - uses: actions/checkout@v2
+      - name: Use Node.js 12
+        uses: actions/setup-node@v1
+        with:
+          node-version: 12
+
+      - name: Cache
+        uses: actions/[email protected]
+        with:
+          # A list of files, directories, and wildcard patterns to cache and restore
+          path: |
+            ~/.gradle/caches/jars-3
+            ~/.gradle/caches/modules-2/files-2.1/
+            ~/.gradle/caches/modules-2/metadata-2.96/
+            ~/.gradle/native
+            ~/.gradle/wrapper
+          # An explicit key for restoring and saving the cache
+          key: ${{ runner.os }}-gradle
+      - uses: actions/cache@v2
+        with:
+          path: ~/.npm
+          key: ${{ runner.os }}-node-${{ hashFiles('**/package-lock.json') }}
+          restore-keys: |
+            ${{ runner.os }}-node-
+
+      # Compile the code
+      - name: Build code
+        run: npm run build:docker
+
+      - name: Make distribution
+        run: |
+          mkdir atlas
+          cp -r LICENSE README.md node_modules js images index.html atlas
+          zip -r atlas.zip atlas
+
+      # Upload it to GitHub
+      - name: Upload to GitHub
+        uses: AButler/[email protected]
+        with:
+          files: 'atlas.zip'
+          repo-token: ${{ secrets.GITHUB_TOKEN }}
+
+  # Build and push tagged release docker image to
+  # ohdsi/atlas:<version> and ohdsi/atlas:latest.
+  docker:
+    # The type of runner that the job will run on
+    runs-on: ubuntu-latest
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+      - uses: actions/checkout@v2
+
+      # Add Docker labels and tags
+      - name: Docker meta
+        id: docker_meta
+        uses: crazy-max/ghaction-docker-meta@v1
+        with:
+          images: ohdsi/atlas
+          tag-match: v(.*)
+          tag-match-group: 1
+
+      # Setup docker build environment
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v1
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+
+      - name: Login to DockerHub
+        uses: docker/login-action@v1
+        with:
+          username: ${{ secrets.DOCKER_HUB_USERNAME }}
+          password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }}
+
+      - name: Build and push
+        id: docker_build
+        uses: docker/build-push-action@v2
+        with:
+          context: ./
+          file: ./Dockerfile
+          # Allow running the image on the architectures supported by nginx-unprivileged:alpine.
+          platforms: linux/amd64,linux/arm/v6,linux/386,linux/ppc64le,linux/s390x
+          push: true
+          tags: ${{ steps.docker_meta.outputs.tags }}
+          # Use runtime labels from docker_meta as well as fixed labels
+          labels: |
+            ${{ steps.docker_meta.outputs.labels }}
+            org.opencontainers.image.authors="Joris Borgdorff <[email protected]>, Lee Evans - www.ltscomputingllc.com"
+            org.opencontainers.image.vendor="OHDSI"

Dockerfile

@@ -28,24 +28,13 @@ RUN RUN find . -type f "(" \
 # Production Nginx image
 FROM nginxinc/nginx-unprivileged:1.19-alpine
 
-# Published version of Atlas
-ARG VERSION=SNAPSHOT
-# Datetime that this image was created in ISO 8601 format
-ARG CREATED=SNAPSHOT
-# Git revision
-ARG REVISION=SNAPSHOT
-
-LABEL org.opencontainers.image.title="OHDSI ATLAS"
+LABEL org.opencontainers.image.title="OHDSI-Atlas"
 LABEL org.opencontainers.image.authors="Joris Borgdorff <[email protected]>, Lee Evans - www.ltscomputingllc.com"
-LABEL org.opencontainers.image.version="${VERSION}"
-LABEL org.opencontainers.image.description="ATLAS is an open source software tool for researchers \
-to conduct scientific analyses on standardized observational data converted to the \
-OMOP Common Data Model. It is served as a static site by Nginx."
+LABEL org.opencontainers.image.description="ATLAS is an open source software tool for researchers to \
+conduct scientific analyses on standardized observational data"
 LABEL org.opencontainers.image.licenses="Apache-2.0"
 LABEL org.opencontainers.image.vendor="OHDSI"
 LABEL org.opencontainers.image.source="https://github.com/OHDSI/Atlas"
-LABEL org.opencontainers.image.created="${CREATED}"
-LABEL org.opencontainers.image.revision="${REVISION}"
 
 # URL where WebAPI can be queried by the client
 ENV WEBAPI_URL=http://localhost:8080/WebAPI/