This project shows a basic approach to analyse single-cell RNA-sequencing data. We included the comparison of different dimension reduction techniques and pseudotemporal ordering of the data using diffusion pseudotime.
We provide the tutorial as iPython Notebook: If you use the jupyter software, you may download the ipynb file directly and run the tutorial on your local machine. In addition, there is the plain R file of the tutorial that contains all commands displayed in the iPython notebook.