add suport for sample sheets and params file #4255
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diitaz93
commented
Feb 28, 2025
| @@ -55,6 +64,48 @@ def _create_nextflow_config(self, case_id: str, dry_run: bool = False) -> None: | |||
| write_content_to_file_or_stdout(content=content, file_path=file_path, dry_run=dry_run) | |||
| LOG.debug(f"Created nextflow config file {file_path.as_posix()} successfully") | |||
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| def _create_params_file(self, case_id: str, dry_run: bool = False) -> None: | |||
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most of the new code in here is copied from the AnalysisAPI
diitaz93
commented
Feb 28, 2025
| @@ -21,3 +23,33 @@ def get_slurm_qos_for_case(case: Case) -> str: | |||
| if are_all_samples_control(case=case): | |||
| return SlurmQos.EXPRESS | |||
| return Priority.priority_to_slurm_qos().get(case.priority) | |||
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copied from analysisAPI too
diitaz93
changed the title
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Description
Alternate version of #4260
Added
Changed
Fixed
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