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Pull requests: Clinical-Genomics/cg

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Pull requests list

Patch: remove multiqc files from fixture and update software version paths
#4291 opened Mar 14, 2025 by rannick Loading…
15 tasks
@rannick
1
work in progress: FreshDesk CLI
#4290 opened Mar 14, 2025 by RasmusBurge-CG • Draft
15 tasks
1
Add Nallo clean-past-run-dirs nallo
#4289 opened Mar 13, 2025 by peterpru • Draft
1 of 15 tasks
@peterpru
1
Set Nallo production QC checks nallo
#4288 opened Mar 13, 2025 by peterpru • Draft
15 tasks
@peterpru
1
Nallo: add cg workflow nallo store-available nallo
#4287 opened Mar 13, 2025 by peterpru Loading…
1 of 16 tasks
@peterpru
3
add logic for differing SLA for order tickets
#4274 opened Mar 10, 2025 by beatrizsavinhas • Draft
15 tasks
1
1
add suport for sample sheets and params file
#4255 opened Feb 28, 2025 by diitaz93 • Draft
15 tasks
3
(Pipeline implementation) Implement seqera submitter
#4243 opened Feb 24, 2025 by islean Loading…
15 tasks
21
DEV - Start pipelines
#4227 opened Feb 19, 2025 by diitaz93 • Draft
15 tasks
1
1
add error handling to fastq clean
#4206 opened Feb 14, 2025 by diitaz93 Loading…
16 tasks
1
4
Add nallo upload nallo
#4205 opened Feb 13, 2025 by rannick • Draft
15 tasks
@rannick
1
feat(keycloak authentication)
#4162 opened Jan 28, 2025 by ChrOertlin Loading…
15 tasks
1
14
add soft-filter-normal argument to paired tga analyses
#4157 opened Jan 27, 2025 by mathiasbio Loading…
1 of 15 tasks
2
Enable hidden analysis in TB to be uploaded
#4003 opened Dec 6, 2024 by eliottBo Loading…
1 of 15 tasks
1
@eliottBo
4
fetch tissue type from original sample
#3979 opened Nov 27, 2024 by rannick Loading…
15 tasks
6
Same-Day Archived Files to PDC Cannot Be Distinguished
#3857 opened Oct 17, 2024 by RasmusBurge-CG Loading…
15 tasks
1
4
feat(update): Pydantic model
#3828 opened Oct 10, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
8
reduce-log-level-compress
#3811 opened Oct 7, 2024 by Vince-janv Loading…
2
feat/connect order to Freshdesk ticket
#3620 opened Aug 21, 2024 by ahdamin • Draft
1
feat/add freshdesk properties
#3576 opened Aug 15, 2024 by ahdamin Loading…
4
Remove pandas from gsaid api
#3393 opened Jul 4, 2024 by henrikstranneheim Loading…
1 of 15 tasks
@henrikstranneheim
16
Rename archive location
#3289 opened May 27, 2024 by islean • Draft
15 tasks
@islean
1
Update use_read_count_threshold for taxprofiler
#3196 opened May 2, 2024 by sofstam Loading…
15 tasks
6
Update the lowest python version to 3.11 to include StrEnum
#3178 opened Apr 25, 2024 by samuell • Draft
12 tasks
1
Enum Example for PhenotypeStatus
#3065 opened Mar 22, 2024 by Vince-janv • Draft
15 tasks
1
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