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Patch: remove multiqc files from fixture and update software version paths #4291

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79 changes: 2 additions & 77 deletions cg/resources/raredisease_bundle_filenames.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -545,7 +545,7 @@
tag: autozyg
- format: png
id: SAMPLEID
path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_regions/SAMPLEID_rhocall_filter_cadd_vep_upd_regions_1.png
path: PATHTOCASE/annotate_snv/genome/SAMPLEID_chromograph_regions/SAMPLEID_upd_regions_1.png
step: chromograph_upd
tag: regions
- format: png
Expand Down Expand Up @@ -800,7 +800,7 @@
tag: qc-metrics
- format: yml
id: CASEID
path: PATHTOCASE/pipeline_info/nf_core_pipeline_software_mqc_versions.yml
path: PATHTOCASE/pipeline_info/nf_core_raredisease_software_mqc_versions.yml
step: software-versions
tag: software-versions
- format: meta
Expand All @@ -813,81 +813,6 @@
path: PATHTOCASE/multiqc/multiqc_report.html
step: multiqc
tag: multiqc-html
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/mosdepth_cov_dist.json
step: multiqc
tag: multiqc-mosdepth-covdist
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/mosdepth_cumcov_dist.json
step: multiqc
tag: multiqc-mosdepth-cumcov
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/mosdepth_perchrom.json
step: multiqc
tag: multiqc-mosdepth-perchrom
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_general_stats.json
step: multiqc
tag: multiqc-general-stats
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_peddy.json
step: multiqc
tag: multiqc-peddy
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_AlignmentSummaryMetrics.json
step: multiqc
tag: multiqc-picard-alignment
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_HsMetrics.json
step: multiqc
tag: multiqc-picard-hs
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_insertSize.json
step: multiqc
tag: multiqc-picard-insertsize
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_quality_by_cycle.json
step: multiqc
tag: multiqc-picard-qualitycycle
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_quality_score_distribution.json
step: multiqc
tag: multiqc-picard-qualitydistr
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_picard_wgsmetrics.json
step: multiqc
tag: multiqc-picard-wgs
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/multiqc_qualimap_bamqc_genome_results.json
step: multiqc
tag: multiqc-picard-bamqc
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/picard_histogram_1.json
step: multiqc
tag: multiqc-picard-histogram1
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/picard_histogram_2.json
step: multiqc
tag: multiqc-picard-histogram2
- format: meta
id: CASEID
path: PATHTOCASE/multiqc/multiqc_data/picard_histogram_3.json
step: multiqc
tag: multiqc-picard-histogram3
- format: csv
id: CASEID
path: PATHTOCASE/CASEID_samplesheet.csv
Expand Down
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