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Sheets deletion timeline event stuck in SUBMIT state if iRODS collections exist #1798

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mikkonie opened this issue Sep 22, 2023 · 5 comments
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Sheets deletion timeline event stuck in SUBMIT state if iRODS collections exist #1798

mikkonie opened this issue Sep 22, 2023 · 5 comments
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@mikkonie
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app: samplesheets Issue in the samplesheets app app: taskflowbackend Issue in the taskflowbackend app bug Something isn't working
Milestone
v1.0.0

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@mikkonie
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mikkonie commented Sep 22, 2023 •
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I noticed this in our production server logs. A user has initiated sheet deletion and a sheet_delete timeline event is created, but it ends with the SUBMIT status.

As far as I can see, the deletion has actually gone through and the project has been in a normal state afterwards, but still, this should not happen.

Update: This happens only if iRODS collections are to be created. This means something probably goes wrong in the related taskflow. To be investigated for v1.0.0.
@mikkonie mikkonie added bug Something isn't working app: samplesheets Issue in the samplesheets app labels Sep 22, 2023
@mikkonie mikkonie added this to the v1.0.0 milestone Sep 22, 2023
@mikkonie mikkonie self-assigned this Sep 22, 2023
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This might be related to #1894. To be looked into..

@mikkonie mikkonie mentioned this issue Feb 19, 2024
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@mikkonie mikkonie added the ongoing Ongoing issue, needs observation or pending on other projects label Feb 19, 2024
@mikkonie mikkonie removed this from the v1.0.0 milestone Feb 19, 2024
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This may be the case of admin(s) updating things stuck due to iRODS problems and failing to update timeline status manually. See dsicussion in #1894. I'm setting this to ongoing for now and I'll keep an eye out of further occurrences.

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I've observed this happening again, during a time when no iRODS issues were reported.

One moving part which may aid in reproducing: the iRODS collections had been created for the sheets.

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Bingo! This fails if iRODS collections exist for the investigation. If no collections have been created, timeline is updated appropriately.

Updating the description and tagging this for v1.0.0.

@mikkonie mikkonie changed the title Timeline event for sheets deletion ending in SUBMIT state Sheets deletion timeline event stuck in SUBMIT state if iRODS collections exist Sep 17, 2024
@mikkonie mikkonie added this to the v1.0.0 milestone Sep 17, 2024
@mikkonie mikkonie added app: taskflowbackend Issue in the taskflowbackend app and removed ongoing Ongoing issue, needs observation or pending on other projects labels Sep 17, 2024
mikkonie added a commit that referenced this issue Sep 25, 2024
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fix SheetDeleteView timeline status updating (#1798), refactor tests
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Fixed.

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app: samplesheets Issue in the samplesheets app app: taskflowbackend Issue in the taskflowbackend app bug Something isn't working
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v1.0.0
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