UAPI docs update

.github/workflows/docs.yml

@@ -1,4 +1,4 @@
-name: Build and deploy docs
+name: documentation
 
 on:
   push:
@@ -22,7 +22,7 @@ jobs:
     steps:
       - name: Checkout
         uses: actions/checkout@v3
-        with: 
+        with:
           fetch-depth: 0
       - name: Setup Pages
         id: pages
@@ -45,7 +45,7 @@ jobs:
       - name: Upload build artifacts
         uses: actions/upload-pages-artifact@v1
         with:
-          path: './docs/build/html'
+          path: "./docs/build/html"
 
   deploy:
     environment:

README.md

@@ -27,7 +27,7 @@ used at the Biohub and in the broader imaging community.
 
 ### Installation
 
-Install a pre-release of iohub with pip:
+Install a released version of iohub from PyPI with pip:
 
 ```sh
 pip install iohub
@@ -103,7 +103,7 @@ Read a directory containing a TIFF dataset:
 from iohub import read_images
 
 reader = read_images("/path/to/data/")
-print(reader.shape)
+print(reader)
 ```
 
 ## Why iohub?

docs/source/_static/switcher.json

@@ -2,5 +2,9 @@
     {
         "version": "latest",
         "url": "/main/index.html"
+    },
+    {
+        "version": "v0.1.0",
+        "url": "/v0.1.0/index.html"
     }
-]
+]

iohub/convert.py

@@ -352,7 +352,7 @@ def _convert_image_plane_metadata(self, fov, zarr_name: str):
                 if not sorted_keys:
                     # Sort keys, ordering keys without dashes first
                     sorted_keys = sorted(
-                        metadata.keys(), key=lambda x: ('-' in x, x)
+                        metadata.keys(), key=lambda x: ("-" in x, x)
                     )
 
                 sorted_metadata = {key: metadata[key] for key in sorted_keys}

iohub/reader.py

@@ -10,6 +10,7 @@
 import tifffile as tiff
 import zarr
 
+from iohub._deprecated.reader_base import ReaderBase
 from iohub._deprecated.singlepagetiff import MicromanagerSequenceReader
 from iohub._deprecated.zarrfile import ZarrReader
 from iohub.fov import BaseFOVMapping
@@ -127,7 +128,7 @@ def read_images(
     data_type: Literal[
         "singlepagetiff", "ometiff", "ndtiff", "omezarr"
     ] = None,
-):
+) -> ReaderBase | BaseFOVMapping:
     """Read image arrays and metadata from a Micro-Manager dataset.
     Supported formats are Micro-Manager-acquired TIFF datasets
     (single-page TIFF, multi-page OME-TIFF, NDTIFF),
@@ -143,8 +144,8 @@ def read_images(
 
     Returns
     -------
-    Reader
-        A child instance of ReaderBase
+    ReaderBase | BaseFOVMapping
+        Image collection object for the dataset
     """
     path = Path(path).resolve()
     # try to guess data type