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Hakonsbm cpp11 librandom #36

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a87571c
Changed comparison to catch changes where number of warnings is reduced
hakonsbm Oct 19, 2020
bfc706d
Add description for SIONlib file format to backend documentation
jougs Oct 20, 2020
d23ced2
Update figure
jougs Oct 20, 2020
e5dd0ce
fix get on SynapseCollection with more than one synapse
stinebuu Oct 23, 2020
d935458
refactor: separate structural plasticity from archiving node to its o…
clinssen Oct 30, 2020
0e1e71f
Apply suggestions from code review
jougs Nov 3, 2020
50c57d8
Updated section on rules
stinebuu Nov 3, 2020
3af70bc
Updated the Synapse Specification section
stinebuu Nov 3, 2020
591374d
Added collocated synapse section
stinebuu Nov 3, 2020
ce9aae5
improvements based on code review
clinssen Nov 3, 2020
5f71ad6
rename spike_detector to spike_recorder
clinssen Nov 3, 2020
1159664
Updated Distributed parameters section
stinebuu Nov 3, 2020
9297e51
remove comment
clinssen Nov 3, 2020
9ee3571
clean up initial value parameters
clinssen Nov 3, 2020
5baeb9a
Merge remote-tracking branch 'upstream/master' into tsodyks2_first_spike
clinssen Nov 3, 2020
803a425
Updated receptor type, synapse types and inspecting/modify connections
stinebuu Nov 4, 2020
5084881
Small update to documentation
stinebuu Nov 4, 2020
bcaae82
Fix punctuation of bullet list
jougs Nov 5, 2020
169047c
Fix intro text for reader module
jougs Nov 5, 2020
e074c00
Add SIONlib configuration instructions and fix references
jougs Nov 5, 2020
4a4996f
Merge branch 'master' of github.com:nest/nest-simulator into nestio
jougs Nov 5, 2020
e4fff41
Merge branch 'master' of github.com:nest/nest-simulator into refactor…
jougs Nov 5, 2020
483a1a5
Update nestkernel/recording_backend_sionlib.h
jougs Nov 6, 2020
bdd6340
Update conngen documentation and move to connection management guide
jougs Nov 6, 2020
4c249c6
Fix build script for libneurosim
jougs Nov 6, 2020
23854c3
Add library search path for CSA installation
jougs Nov 6, 2020
368b805
Fix CSA tests
jougs Nov 7, 2020
8ee1ba0
Reorder initializers to avoid warning
jougs Nov 7, 2020
e87dd5e
Remove debug output
jougs Nov 7, 2020
f909055
Merge remote-tracking branch 'upstream/master' into tsodyks2_first_spike
clinssen Nov 9, 2020
2bbc2d3
fix formulation of assertion
clinssen Nov 9, 2020
8118d67
update SetKernelStatus call after API change
clinssen Nov 9, 2020
00d65fe
Switched from getting build type directly to passing it as an argument
hakonsbm Nov 9, 2020
a8ae966
clean up #1820 based on review
clinssen Nov 9, 2020
fb8f8cb
refactor class names from Camel_Case to CamelCase
clinssen Nov 9, 2020
8a09373
Update nestkernel/recording_backend_ascii.h
jougs Nov 9, 2020
edcc6a8
Update nestkernel/recording_backend_sionlib.h
jougs Nov 9, 2020
70f92b0
Remove deleted file also from index
jougs Nov 9, 2020
8c4d8ed
Fix conngen connect using weight and delay
jougs Nov 9, 2020
b66df91
Apply suggestions from code review
sarakonradi Nov 10, 2020
c777c33
Merge master
sarakonradi Nov 10, 2020
64de9d3
Move :orphan: to beginning of file
sarakonradi Nov 10, 2020
444fd2f
Update title underlines
sarakonradi Nov 10, 2020
8b792e3
fix comment typesetting
clinssen Nov 10, 2020
24710b1
print SynapseCollection as columns
stinebuu Nov 10, 2020
cc23df7
Add test for __str__ function
stinebuu Nov 10, 2020
488bdb4
Merge pull request #1793 from clinssen/patch-8
stinebuu Nov 10, 2020
b9648c0
Merge pull request #1518 from steffengraber/cleanup-doc
stinebuu Nov 10, 2020
e970181
Move code around and fix formatting
jougs Nov 10, 2020
0c001a4
Add check for custom synapse parameter
jougs Nov 10, 2020
b08590a
Merge pull request #1796 from hakonsbm/fix_c++_warnings
stinebuu Nov 10, 2020
c208c99
Add test for conflicting specifications of weight and delay
jougs Nov 10, 2020
2448655
Add check for conflicting specifications of weight and delay
jougs Nov 10, 2020
135bb74
Merge branch 'master' of github.com:nest/nest-simulator into refactor…
jougs Nov 10, 2020
228fb15
Move code around
jougs Nov 10, 2020
637c9f0
Make naming in CSA examples and test consistent
jougs Nov 10, 2020
ffc8e97
Rename conn_builder_conngeninterface.* to conn_builder_conngen.*
jougs Nov 10, 2020
da416da
Add libneurosim compilation information and more links
jougs Nov 10, 2020
858f661
Merge remote-tracking branch 'origin/master' into structural_plastici…
clinssen Nov 10, 2020
4d836f2
Delete trailing whitespace
jougs Nov 10, 2020
7fa0a9f
Merge branch 'nestio' of github.com:jougs/nest-simulator into nestio
jougs Nov 10, 2020
43eb868
Update text
stinebuu Nov 10, 2020
e40c193
Remove line that crept in via a merge conflict resolution
jougs Nov 10, 2020
8324fa0
Remove trailing whitespace
jougs Nov 10, 2020
e17cead
Started work on RNG guide for NEST 3.
heplesser Nov 10, 2020
99b3260
Merge remote-tracking branch 'nest-simulator/master' into update_conn…
stinebuu Nov 11, 2020
ebc497f
remove unused #define
clinssen Nov 11, 2020
f1af5aa
remove unnecessary includes
clinssen Nov 11, 2020
800d4b0
update hardcoded number of warnings
clinssen Nov 11, 2020
9edd3d7
Added links, headers, note, removed "example" before every example,
stinebuu Nov 11, 2020
96bba75
Improve documentation for parallel computing and add more hyperlinks
jougs Nov 11, 2020
bb8e3c0
Apply suggestions from code review
jougs Nov 11, 2020
7611bed
Merge pull request #1820 from clinssen/structural_plasticity_node
stinebuu Nov 11, 2020
1d63355
Added information about SynapseCollection functionality
stinebuu Nov 11, 2020
b870a71
Update nestkernel/recording_backend_sionlib.h
jougs Nov 11, 2020
7ab7a68
Remove workaround for https://github.com/INCF/libneurosim/issues/19
jougs Nov 11, 2020
f844959
Update description and comments to reflect reality
jougs Nov 11, 2020
24cc546
Merge branch 'refactor_conngen_module' of github.com:jougs/nest-simul…
jougs Nov 11, 2020
e59d104
Apply suggestions from code review
jougs Nov 11, 2020
ccfae0d
nest-3ify
jougs Nov 11, 2020
824caee
Prevent ConnBuilderConngen from being used with collocated synapses
jougs Nov 11, 2020
c2b4ead
Fix formatting
jougs Nov 11, 2020
16cae4a
Merge branch 'master' of github.com:nest/nest-simulator into refactor…
jougs Nov 11, 2020
86f682c
Merge branch 'refactor_conngen_module' of github.com:jougs/nest-simul…
jougs Nov 11, 2020
700da50
Apply suggestions from code review
jougs Nov 11, 2020
1700daf
Fix formatting of Python files
jougs Nov 11, 2020
85526d7
Update connection_management guide
stinebuu Nov 12, 2020
b661296
Add documentation on array indexing to the nest3 overview
hakonsbm Nov 12, 2020
fe5dd7e
Update examples with nest.GetConnections
stinebuu Nov 12, 2020
cf08638
Python 3.9.0 running on macOS 10.15.7,pip3 installation for OsX
lekshmideepu Nov 12, 2020
745e49a
whitespace correction
lekshmideepu Nov 12, 2020
96ab86d
installing nose for OsX
lekshmideepu Nov 12, 2020
9136426
whitespace correction..
lekshmideepu Nov 12, 2020
77440d6
syntax correction
lekshmideepu Nov 12, 2020
fc81bb7
installing man-page free nose for OsX
lekshmideepu Nov 12, 2020
4b68764
Added example on connecting with a sparse weight matrix
hakonsbm Nov 12, 2020
ab50ada
Added missing argument
hakonsbm Nov 12, 2020
88a6a38
Added checks for typos in weight and delay specification
hakonsbm Nov 12, 2020
3dc6774
Added check of synapse dictionary
hakonsbm Nov 12, 2020
a829aa4
installing numpy 1.16.5 on OsX
lekshmideepu Nov 12, 2020
708168c
installing numpy wheel on OsX
lekshmideepu Nov 12, 2020
ead9081
Revised fragment sentence
hakonsbm Nov 12, 2020
4f380b7
Apply suggestions from code review
hakonsbm Nov 12, 2020
89a2b0e
update the PATH to find the nosetests
lekshmideepu Nov 12, 2020
ff23834
Merge branch 'master' into fix_issue_1650
sarakonradi Nov 12, 2020
971f4cd
Change 'example' to 'model'
sarakonradi Nov 12, 2020
cf63ebb
Add sim_params.py and network_params.py links
sarakonradi Nov 12, 2020
9a9b199
Rename to cortical microcircuit
sarakonradi Nov 12, 2020
eb33c31
Update examples/index.rst
sarakonradi Nov 12, 2020
e69b134
Update README.rst to mention 'cortical'
sarakonradi Nov 12, 2020
745211a
Apply suggestions from code review
jougs Nov 12, 2020
7b0ad89
Fix NEST3 transition guide formatting
clinssen Nov 13, 2020
1819dd6
Merge branch 'master' of github.com:nest/nest-simulator into nestio
jougs Nov 13, 2020
5f6c77e
Merge branch 'nestio' of github.com:jougs/nest-simulator into nestio
jougs Nov 13, 2020
3110d84
unify spelling of 'postsynaptic'
clinssen Nov 13, 2020
bbeff4d
Update docstring descriptions of setting parameters
stinebuu Nov 13, 2020
d7b18f6
Update tutorial with parameter dictionary of lists
stinebuu Nov 13, 2020
6bd4275
Add information of parameter dictionary of lists in nest2->nest3 doc
stinebuu Nov 13, 2020
ae61245
Merge pull request #1740 from jd41/patch-7
stinebuu Nov 13, 2020
2b0e9c8
Undo sim_params.py and network_params.py link update
sarakonradi Nov 13, 2020
500a741
Add test case for error reporting if using collocated synapses
jougs Nov 13, 2020
02fc169
Rename for consistency with other connect tests
jougs Nov 13, 2020
5233ac8
using numpy 1.19.3 on OsX
lekshmideepu Nov 13, 2020
d5802c9
Convert inline reference to footnote and reference section
jougs Nov 13, 2020
1ba1cc5
Correct link
stinebuu Nov 13, 2020
427ed51
Removed the explicit usage of numpy on Travis Linux builds
lekshmideepu Nov 13, 2020
301375d
Added index on right hand side and made headers a little more consistent
stinebuu Nov 13, 2020
c3e3ff8
Update doc/guides/connection_management.rst
hakonsbm Nov 13, 2020
b3d2172
Apply suggestions from code review
stinebuu Nov 13, 2020
08ea12b
Added NodeCollections and weight matrix to example
hakonsbm Nov 13, 2020
ce8a118
Added that NodeCollection array indices have to be strictly ascending
hakonsbm Nov 13, 2020
2de75f9
Added comment
hakonsbm Nov 13, 2020
38eb9af
Moved section on connecting sparse matrices with array indexing
hakonsbm Nov 13, 2020
56cb8bd
right align
stinebuu Nov 13, 2020
8b65667
Update .travis.yml
lekshmideepu Nov 13, 2020
1b8bfc7
Update .travis.yml
lekshmideepu Nov 13, 2020
9a8056d
installing nosetests using pip on OsX
lekshmideepu Nov 13, 2020
36d2c02
Ensure that the build uses third-party nose plugins
lekshmideepu Nov 16, 2020
f8670e0
Parse warnings more specifically
jougs Nov 16, 2020
8a77640
Update extras/travis_build.sh
lekshmideepu Nov 16, 2020
ddea459
Installing nose as user-only
lekshmideepu Nov 16, 2020
3d1893e
Adapt expected number of warnings
jougs Nov 16, 2020
54893be
Compile regular expression to increase performance of warning scan
jougs Nov 16, 2020
1f2f5c4
Reduce number of warnings and adapt expected numbers in log parser ac…
jougs Nov 16, 2020
ee5efc6
Apply suggestions from code review
jougs Nov 17, 2020
4c64c3c
Ignore warnings from SLI and make regular expresssion more generic
jougs Nov 17, 2020
1833897
Simplify
jougs Nov 17, 2020
fcef630
Make variable name less screamy
jougs Nov 17, 2020
20dd576
Merge branch 'travisci' of github.com:jougs/nest-simulator into travisci
jougs Nov 17, 2020
ae7da9f
Compare stripped line to ignore trailing newline
jougs Nov 17, 2020
5c63760
Merge pull request #1806 from jougs/nestio
terhorstd Nov 17, 2020
b73eb63
Merge pull request #1845 from nest/transition-guide-formatting
terhorstd Nov 17, 2020
36a3f92
Merge pull request #1846 from clinssen/postsynaptic-spelling
terhorstd Nov 17, 2020
2223518
installing nose1.3.7 wheel from the extras dir
lekshmideepu Nov 17, 2020
f289175
copying nose1.3.7 wheel from the extras dir to travis /Users/lekshmi
lekshmideepu Nov 17, 2020
e322613
Include implementation header instead of regular header
jougs Nov 17, 2020
fb076d1
Update extras/travis_build.sh
lekshmideepu Nov 17, 2020
1ac75d4
Merge pull request #1852 from jougs/travisci
jougs Nov 18, 2020
8d7e611
installing nose1.3.7 wheel from pypi
lekshmideepu Nov 18, 2020
1171de2
Merge branch 'master' into macos-cython-numpy
lekshmideepu Nov 18, 2020
139a25c
installing nose in user space
lekshmideepu Nov 18, 2020
385fb91
Update .travis.yml
lekshmideepu Nov 18, 2020
c354d42
Merge pull request #1839 from lekshmideepu/macos-cython-numpy
jougs Nov 18, 2020
97e4353
Merge remote-tracking branch 'nest-simulator/master' into print_Synap…
stinebuu Nov 19, 2020
7108330
Merge remote-tracking branch 'nest-simulator/master' into
stinebuu Nov 19, 2020
9db85ae
Merge remote-tracking branch 'nest-simulator/master' into update_crea…
stinebuu Nov 19, 2020
b79db9b
Merge remote-tracking branch 'origin/update_create_api' into update_c…
stinebuu Nov 19, 2020
253b867
Merge remote-tracking branch 'nest-simulator/master' into synapse_col…
stinebuu Nov 19, 2020
50e3293
Merge remote-tracking branch 'nest/master' into array_indexing_doc
hakonsbm Nov 19, 2020
9d480f2
Use unicode version of vertical ellipsis
stinebuu Nov 19, 2020
4421578
Merge branch 'master' into fix_issue_1650
sarakonradi Nov 19, 2020
444695a
Merge branch 'master' of github.com:nest/nest-simulator into refactor…
jougs Nov 19, 2020
1987458
Merge pull request #1838 from hakonsbm/array_indexing_doc
stinebuu Nov 20, 2020
f7a5dbc
Use 3 decimals for weight and delay
stinebuu Nov 20, 2020
88c7c1b
make it possible to print full connectome
stinebuu Nov 20, 2020
1c73d71
Update test
stinebuu Nov 20, 2020
b0f05c0
Update documentation
stinebuu Nov 20, 2020
f325ef2
Add backquotes
stinebuu Nov 20, 2020
39722a3
Update text
stinebuu Nov 20, 2020
1b80b22
alphabetize connection rules
stinebuu Nov 20, 2020
735729a
Merge remote-tracking branch 'nest-simulator/master' into update_conn…
stinebuu Nov 20, 2020
0239897
Refer to GetDefaults()
stinebuu Nov 20, 2020
aca7b53
Set expected_warnings to 0 unconditionally
jougs Nov 20, 2020
1dcf3ad
Added information of the receptor_types
stinebuu Nov 20, 2020
876c69a
Fix import of renamed file
jougs Nov 20, 2020
8f5a5fc
Merge pull request #1830 from jougs/refactor_conngen_module
stinebuu Nov 23, 2020
eb3b90f
Docs: Update NeuroFedora URL
sanjayankur31 Nov 25, 2020
4229d7a
Merge remote-tracking branch 'nest-simulator/master' into synapse_col…
stinebuu Nov 27, 2020
12a37e3
Added comment
stinebuu Nov 27, 2020
3026c33
cleaner code
stinebuu Nov 27, 2020
291d4c4
simplify code
stinebuu Nov 27, 2020
90b925e
Added comment about unicode
stinebuu Nov 27, 2020
458ddab
Use name constant for max size for full print
stinebuu Nov 27, 2020
0c2e577
Helper function for formating each row
stinebuu Nov 27, 2020
cef15f3
Update test
stinebuu Nov 27, 2020
423a0da
Update documentation
stinebuu Nov 27, 2020
a18a3e6
Merge pull request #1812 from stinebuu/synapse_collection_get
hakonsbm Nov 30, 2020
2c950e0
Merge pull request #1836 from stinebuu/print_SynapseCollection
jougs Nov 30, 2020
9c8673e
Update random_numbers.rst
heplesser Nov 30, 2020
c66e1d5
Replaced stray double_t occurrances.
heplesser Nov 30, 2020
6848dbe
Merge pull request #1857 from sanjayankur31/fix/neurofedora-link
jougs Dec 1, 2020
c690b7a
Merge pull request #1859 from heplesser/fix-double-t
heplesser Dec 1, 2020
7f9b637
Merge remote-tracking branch 'nest-simulator/master' into
stinebuu Dec 1, 2020
6585e57
receptor types
stinebuu Dec 1, 2020
380cbe6
print of SynapseCollection
stinebuu Dec 1, 2020
5f9582a
Major update of connection management guide
jougs Dec 4, 2020
1584afb
Delete trailing whitespace
jougs Dec 4, 2020
2ee3d63
clean up unit test syntax
clinssen Dec 7, 2020
f0e2782
Update after another thorough readthrough
jougs Dec 7, 2020
3b17c78
Use dummy_param_dicts_
stinebuu Dec 8, 2020
3cae38a
dummy_param_dicts_ must be protected, not private
stinebuu Dec 9, 2020
d31315e
clang
stinebuu Dec 9, 2020
4ad971a
Merge pull request #1848 from stinebuu/update_create_api
hakonsbm Dec 9, 2020
fce617d
Fix warnings
stinebuu Dec 9, 2020
7e97fe6
Remove contact invitation
sarakonradi Dec 10, 2020
2869b63
Merge pull request #1869 from sarakonradi/remove_contact_invitation_h…
terhorstd Dec 10, 2020
36ccfa5
Use Dictionary not DictionaryDatum, and return a reference
stinebuu Dec 15, 2020
f590001
Fix typo in test_sp/test_mpitests.py
niltonlk Dec 18, 2020
4827f69
consistently format strings and comments using double instead of sing…
clinssen Jan 4, 2021
cbda33f
Merge remote-tracking branch 'upstream/master' into tsodyks2_first_spike
clinssen Jan 4, 2021
be21fc9
Merge pull request #1672 from clinssen/tsodyks2_first_spike
stinebuu Jan 5, 2021
fc9c8d0
Apply suggestions from code review
jougs Jan 11, 2021
8876bce
Added `Woverloaded-virtual` compiler flag
hakonsbm Jan 11, 2021
17d3cdd
Merge pull request #8 from jougs/update_connection_management_doc
stinebuu Jan 12, 2021
64005bf
Change Travis macOS build to MINIMAL to avoid timeouts (temporary).
heplesser Jan 12, 2021
9855738
Remove superfluous "the"
stinebuu Jan 12, 2021
bb40aba
Remove dummy_param_dicts_ from ConnBuilder.
heplesser Jan 13, 2021
4958006
Merge branch 'performance_issues' into fix-param-dicts
stinebuu Jan 13, 2021
575111a
Merge pull request #9 from heplesser/fix-param-dicts
stinebuu Jan 13, 2021
9d88468
Fix problems from merging.
stinebuu Jan 13, 2021
570dd86
formatting
stinebuu Jan 13, 2021
de2d773
Fixes for conngen
stinebuu Jan 13, 2021
48b5f04
Fix typo
stinebuu Jan 13, 2021
09251aa
Merge pull request #1889 from heplesser/travis-minimal-macos-build
jougs Jan 13, 2021
34e0c43
Merge remote-tracking branch 'nest-simulator/master' into update_conn…
stinebuu Jan 14, 2021
16dc7a9
create_param_dict_ has changed name
stinebuu Jan 14, 2021
a9f994b
Merge remote-tracking branch 'nest-simulator/master' into performance…
stinebuu Jan 14, 2021
0e6cd28
Merge pull request #1880 from niltonlk/fix_typo_test_sp_test_mpitests_py
jougs Jan 15, 2021
ab3528c
Merge branch 'master' into woverloaded-virtual_flag
hakonsbm Jan 18, 2021
b704074
Stripped down comparison to avoid expensive metadata comparisons
hakonsbm Jan 20, 2021
aa1a8d5
indx -> synapse_indx to avoid confusion
stinebuu Jan 20, 2021
12fff9a
Update ACKNOWLEDGMENTS.md
terhorstd Jan 20, 2021
4f83877
Merge pull request #1894 from hakonsbm/getposition_performance
heplesser Jan 21, 2021
ef2c0c0
Merge pull request #1888 from hakonsbm/woverloaded-virtual_flag
heplesser Jan 21, 2021
f1c0bcf
Merge pull request #1868 from stinebuu/performance_issues
hakonsbm Jan 21, 2021
47b7e43
Merge pull request #1834 from stinebuu/update_connection_management_doc
jougs Jan 22, 2021
caaf063
Merge pull request #1841 from sarakonradi/fix_issue_1650
terhorstd Feb 1, 2021
279b49c
Merge branch 'master' into hakonsbm_cpp11-librandom
heplesser Feb 1, 2021
75c93d6
Added mistakenly dropped file
heplesser Feb 1, 2021
25d8d38
Partial adaptation of test_connect_distributions
heplesser Feb 1, 2021
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Fix typo
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stinebuu committed Jan 13, 2021

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commit 48b5f0420cbbb81d66954617c0b6f109ceb210d2
2 changes: 1 addition & 1 deletion nestkernel/conn_builder_conngen.cpp
Original file line number Diff line number Diff line change
@@ -125,7 +125,7 @@ ConnectionGeneratorBuilder::connect_()
target_node,
target_thread,
synapse_model_id_[ 0 ],
param_dicts_[ 0 ][ target head ],
param_dicts_[ 0 ][ target_thread ],
params[ d_idx ],
params[ w_idx ] );
}