Code

Validate#78

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LouisLeNezet merged 24 commits intonf-core:devnf-core/phaseimpute:devfrom LouisLeNezet:validateLouisLeNezet/phaseimpute:validateCopy head branch name to clipboardJun 7, 2024

+177-81

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Commits on Jun 6, 2024

• Separate validation step from prep panel

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  aa8bdc1

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• Fix posfile csv

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  d8bf7af

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• Update posfile schema samplesheet

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  be123af

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• Update usage and changelog

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  46a6c55

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• Fix usage

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  4d23b27

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Commits on Jun 7, 2024

• Add freq parameter and fix phasing

  

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  3a4f2b2

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• Add patch shapeit5

  

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  388e86e

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• Update changelog

  

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  b145a18

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• Fix linting

  

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  4684178

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• Update usage

  

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  76fa578

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• Fix linting

  

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  70ffba2

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• Use region for chunking

  

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  a462116

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• Fix multiple chunk quilt

  

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  b8a9660

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• Fix chunk generation

  

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  c6a3fd1

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• Fix config file

  

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  8ff13e5

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• Update conf/test_panelprep_fullchr.config

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• Move to --compute_freq

  

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  07da19f

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• Change chunking arguments

  

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  11dd3b9

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• Remove comment

  

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  fd1e099

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• Update usage

  

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  bbd7077

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• Modify panelprep test

  

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  a68da49

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• Simplify empty channel

  

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  39c1514

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• Update main.nf

  

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  37d64d9

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• Reverse modification

  

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  aa46859

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